Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2745 | 3' | -57.1 | NC_001491.2 | + | 50351 | 0.72 | 0.530755 |
Target: 5'- gGCAGGUCCCGCcGCCacccacgccgCAGuCGCcGGCg -3' miRNA: 3'- -CGUCUAGGGCGcUGG----------GUCuGUGaCCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 117547 | 0.72 | 0.530755 |
Target: 5'- cCAGA-CCCa-GACCCAGGCACcGGCc -3' miRNA: 3'- cGUCUaGGGcgCUGGGUCUGUGaCCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 115628 | 0.72 | 0.540544 |
Target: 5'- cGCGGAgacugccacacUCCGCGGCCCAgcGACGC-GGCu -3' miRNA: 3'- -CGUCUa----------GGGCGCUGGGU--CUGUGaCCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 112953 | 0.72 | 0.550392 |
Target: 5'- cGCGGG-CCCGUGACCCuuGACcagauaUGGCc -3' miRNA: 3'- -CGUCUaGGGCGCUGGGu-CUGug----ACCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 2972 | 0.72 | 0.570246 |
Target: 5'- gGguGggCCCuCGACaCCAGGCAC-GGCg -3' miRNA: 3'- -CguCuaGGGcGCUG-GGUCUGUGaCCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 94079 | 0.72 | 0.570246 |
Target: 5'- uGC--GUCCCacGUGACCCuaguacucgGGACGCUGGCu -3' miRNA: 3'- -CGucUAGGG--CGCUGGG---------UCUGUGACCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 80528 | 0.7 | 0.640727 |
Target: 5'- gGCGGuUCCCGCG-UCCGG-CGC-GGCg -3' miRNA: 3'- -CGUCuAGGGCGCuGGGUCuGUGaCCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 114956 | 0.7 | 0.650829 |
Target: 5'- cGCGGGUcgCCUGCG-CCguG-CGCUGGCc -3' miRNA: 3'- -CGUCUA--GGGCGCuGGguCuGUGACCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 21671 | 0.7 | 0.670981 |
Target: 5'- uGCGGGg-CCGCGGCaCuGGCGCUGGUc -3' miRNA: 3'- -CGUCUagGGCGCUGgGuCUGUGACCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 114665 | 0.7 | 0.691009 |
Target: 5'- uCGGGUUCCaCGACCCGGACuuugaggagGGCg -3' miRNA: 3'- cGUCUAGGGcGCUGGGUCUGuga------CCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 141586 | 0.69 | 0.74009 |
Target: 5'- cGCGGGcCCUGCG-CCCGuAC-CUGGCc -3' miRNA: 3'- -CGUCUaGGGCGCuGGGUcUGuGACCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 95277 | 0.69 | 0.74009 |
Target: 5'- cGCAGuaguGUCCCGuCGcgcugcgagaAUCCAGGCGC-GGCa -3' miRNA: 3'- -CGUC----UAGGGC-GC----------UGGGUCUGUGaCCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 144479 | 0.69 | 0.749667 |
Target: 5'- -gGGGUUCCGCGgcgggcGCUCGGACGacgGGCg -3' miRNA: 3'- cgUCUAGGGCGC------UGGGUCUGUga-CCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 148148 | 0.68 | 0.768508 |
Target: 5'- aGCuuGcgCCUgGCGgaGCCCAGGCGCaGGCa -3' miRNA: 3'- -CGu-CuaGGG-CGC--UGGGUCUGUGaCCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 115383 | 0.68 | 0.786875 |
Target: 5'- cCAGAUCCC-CGACCCcgaGGACgugaaGgUGGUg -3' miRNA: 3'- cGUCUAGGGcGCUGGG---UCUG-----UgACCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 137734 | 0.68 | 0.786875 |
Target: 5'- gGCGGGcgCCCGCGGguCCCcGGgGCggGGCg -3' miRNA: 3'- -CGUCUa-GGGCGCU--GGGuCUgUGa-CCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 85995 | 0.67 | 0.804699 |
Target: 5'- aGCGGcGUCaaaCGCGGCCaCGGGCGgcGGCg -3' miRNA: 3'- -CGUC-UAGg--GCGCUGG-GUCUGUgaCCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 116321 | 0.67 | 0.804699 |
Target: 5'- -gGGggCCCG-GGCCCGGGC-CUcGGCc -3' miRNA: 3'- cgUCuaGGGCgCUGGGUCUGuGA-CCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 72162 | 0.67 | 0.813387 |
Target: 5'- aUAGGUCCCGCGugagguCCCGGGgGCUc-- -3' miRNA: 3'- cGUCUAGGGCGCu-----GGGUCUgUGAccg -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 146435 | 0.67 | 0.830272 |
Target: 5'- cGCGGAccgagggCgCCGgGGCCuCGGGCuguuGCUGGCu -3' miRNA: 3'- -CGUCUa------G-GGCgCUGG-GUCUG----UGACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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