miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2745 3' -57.1 NC_001491.2 + 137734 0.68 0.786875
Target:  5'- gGCGGGcgCCCGCGGguCCCcGGgGCggGGCg -3'
miRNA:   3'- -CGUCUa-GGGCGCU--GGGuCUgUGa-CCG- -5'
2745 3' -57.1 NC_001491.2 + 115383 0.68 0.786875
Target:  5'- cCAGAUCCC-CGACCCcgaGGACgugaaGgUGGUg -3'
miRNA:   3'- cGUCUAGGGcGCUGGG---UCUG-----UgACCG- -5'
2745 3' -57.1 NC_001491.2 + 148148 0.68 0.768508
Target:  5'- aGCuuGcgCCUgGCGgaGCCCAGGCGCaGGCa -3'
miRNA:   3'- -CGu-CuaGGG-CGC--UGGGUCUGUGaCCG- -5'
2745 3' -57.1 NC_001491.2 + 144479 0.69 0.749667
Target:  5'- -gGGGUUCCGCGgcgggcGCUCGGACGacgGGCg -3'
miRNA:   3'- cgUCUAGGGCGC------UGGGUCUGUga-CCG- -5'
2745 3' -57.1 NC_001491.2 + 95277 0.69 0.74009
Target:  5'- cGCAGuaguGUCCCGuCGcgcugcgagaAUCCAGGCGC-GGCa -3'
miRNA:   3'- -CGUC----UAGGGC-GC----------UGGGUCUGUGaCCG- -5'
2745 3' -57.1 NC_001491.2 + 141586 0.69 0.74009
Target:  5'- cGCGGGcCCUGCG-CCCGuAC-CUGGCc -3'
miRNA:   3'- -CGUCUaGGGCGCuGGGUcUGuGACCG- -5'
2745 3' -57.1 NC_001491.2 + 114665 0.7 0.691009
Target:  5'- uCGGGUUCCaCGACCCGGACuuugaggagGGCg -3'
miRNA:   3'- cGUCUAGGGcGCUGGGUCUGuga------CCG- -5'
2745 3' -57.1 NC_001491.2 + 21671 0.7 0.670981
Target:  5'- uGCGGGg-CCGCGGCaCuGGCGCUGGUc -3'
miRNA:   3'- -CGUCUagGGCGCUGgGuCUGUGACCG- -5'
2745 3' -57.1 NC_001491.2 + 114956 0.7 0.650829
Target:  5'- cGCGGGUcgCCUGCG-CCguG-CGCUGGCc -3'
miRNA:   3'- -CGUCUA--GGGCGCuGGguCuGUGACCG- -5'
2745 3' -57.1 NC_001491.2 + 80528 0.7 0.640727
Target:  5'- gGCGGuUCCCGCG-UCCGG-CGC-GGCg -3'
miRNA:   3'- -CGUCuAGGGCGCuGGGUCuGUGaCCG- -5'
2745 3' -57.1 NC_001491.2 + 2972 0.72 0.570246
Target:  5'- gGguGggCCCuCGACaCCAGGCAC-GGCg -3'
miRNA:   3'- -CguCuaGGGcGCUG-GGUCUGUGaCCG- -5'
2745 3' -57.1 NC_001491.2 + 94079 0.72 0.570246
Target:  5'- uGC--GUCCCacGUGACCCuaguacucgGGACGCUGGCu -3'
miRNA:   3'- -CGucUAGGG--CGCUGGG---------UCUGUGACCG- -5'
2745 3' -57.1 NC_001491.2 + 112953 0.72 0.550392
Target:  5'- cGCGGG-CCCGUGACCCuuGACcagauaUGGCc -3'
miRNA:   3'- -CGUCUaGGGCGCUGGGu-CUGug----ACCG- -5'
2745 3' -57.1 NC_001491.2 + 115628 0.72 0.540544
Target:  5'- cGCGGAgacugccacacUCCGCGGCCCAgcGACGC-GGCu -3'
miRNA:   3'- -CGUCUa----------GGGCGCUGGGU--CUGUGaCCG- -5'
2745 3' -57.1 NC_001491.2 + 50351 0.72 0.530755
Target:  5'- gGCAGGUCCCGCcGCCacccacgccgCAGuCGCcGGCg -3'
miRNA:   3'- -CGUCUAGGGCGcUGG----------GUCuGUGaCCG- -5'
2745 3' -57.1 NC_001491.2 + 117547 0.72 0.530755
Target:  5'- cCAGA-CCCa-GACCCAGGCACcGGCc -3'
miRNA:   3'- cGUCUaGGGcgCUGGGUCUGUGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.