miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2745 3' -57.1 NC_001491.2 + 2972 0.72 0.570246
Target:  5'- gGguGggCCCuCGACaCCAGGCAC-GGCg -3'
miRNA:   3'- -CguCuaGGGcGCUG-GGUCUGUGaCCG- -5'
2745 3' -57.1 NC_001491.2 + 10280 0.66 0.883485
Target:  5'- aCAGc-CCCGCGcGCCaaacaCAGAUGCUGGUg -3'
miRNA:   3'- cGUCuaGGGCGC-UGG-----GUCUGUGACCG- -5'
2745 3' -57.1 NC_001491.2 + 13924 0.67 0.838455
Target:  5'- cCGGggCUgGCGGCCuUGGGCGgUGGCa -3'
miRNA:   3'- cGUCuaGGgCGCUGG-GUCUGUgACCG- -5'
2745 3' -57.1 NC_001491.2 + 21671 0.7 0.670981
Target:  5'- uGCGGGg-CCGCGGCaCuGGCGCUGGUc -3'
miRNA:   3'- -CGUCUagGGCGCUGgGuCUGUGACCG- -5'
2745 3' -57.1 NC_001491.2 + 40311 0.66 0.890259
Target:  5'- uGCAGAUCCUgauGCG-CgCGGGcCACcugGGCa -3'
miRNA:   3'- -CGUCUAGGG---CGCuGgGUCU-GUGa--CCG- -5'
2745 3' -57.1 NC_001491.2 + 50351 0.72 0.530755
Target:  5'- gGCAGGUCCCGCcGCCacccacgccgCAGuCGCcGGCg -3'
miRNA:   3'- -CGUCUAGGGCGcUGG----------GUCuGUGaCCG- -5'
2745 3' -57.1 NC_001491.2 + 55697 0.66 0.890259
Target:  5'- cGCGGAUCacaggcaguaCCGCGAggUCCGaaucGACGCUccgGGCg -3'
miRNA:   3'- -CGUCUAG----------GGCGCU--GGGU----CUGUGA---CCG- -5'
2745 3' -57.1 NC_001491.2 + 72162 0.67 0.813387
Target:  5'- aUAGGUCCCGCGugagguCCCGGGgGCUc-- -3'
miRNA:   3'- cGUCUAGGGCGCu-----GGGUCUgUGAccg -5'
2745 3' -57.1 NC_001491.2 + 75192 0.67 0.846455
Target:  5'- cCAGAggCUCGCGAuccccuCCCAGACccacacCUGGUg -3'
miRNA:   3'- cGUCUa-GGGCGCU------GGGUCUGu-----GACCG- -5'
2745 3' -57.1 NC_001491.2 + 79344 0.66 0.861127
Target:  5'- aGCGcc-UCCGCGGUCCAGcggggucGCGCUGGCa -3'
miRNA:   3'- -CGUcuaGGGCGCUGGGUC-------UGUGACCG- -5'
2745 3' -57.1 NC_001491.2 + 80528 0.7 0.640727
Target:  5'- gGCGGuUCCCGCG-UCCGG-CGC-GGCg -3'
miRNA:   3'- -CGUCuAGGGCGCuGGGUCuGUGaCCG- -5'
2745 3' -57.1 NC_001491.2 + 82939 0.67 0.846455
Target:  5'- aGCGGcgagcgccGUCCUGCGGUUgGGGCACgGGCu -3'
miRNA:   3'- -CGUC--------UAGGGCGCUGGgUCUGUGaCCG- -5'
2745 3' -57.1 NC_001491.2 + 85995 0.67 0.804699
Target:  5'- aGCGGcGUCaaaCGCGGCCaCGGGCGgcGGCg -3'
miRNA:   3'- -CGUC-UAGg--GCGCUGG-GUCUGUgaCCG- -5'
2745 3' -57.1 NC_001491.2 + 87361 0.67 0.846455
Target:  5'- aGCAGAcgCCCagaaUGAucCCCAGACccCUGGCu -3'
miRNA:   3'- -CGUCUa-GGGc---GCU--GGGUCUGu-GACCG- -5'
2745 3' -57.1 NC_001491.2 + 91690 0.66 0.869291
Target:  5'- cGCuAGca-CgGCGuCCCuGACGCUGGCc -3'
miRNA:   3'- -CG-UCuagGgCGCuGGGuCUGUGACCG- -5'
2745 3' -57.1 NC_001491.2 + 94079 0.72 0.570246
Target:  5'- uGC--GUCCCacGUGACCCuaguacucgGGACGCUGGCu -3'
miRNA:   3'- -CGucUAGGG--CGCUGGG---------UCUGUGACCG- -5'
2745 3' -57.1 NC_001491.2 + 95277 0.69 0.74009
Target:  5'- cGCAGuaguGUCCCGuCGcgcugcgagaAUCCAGGCGC-GGCa -3'
miRNA:   3'- -CGUC----UAGGGC-GC----------UGGGUCUGUGaCCG- -5'
2745 3' -57.1 NC_001491.2 + 95723 0.66 0.876495
Target:  5'- aGCuc-UCUgaCGCGcCCCAGAgACUGGUa -3'
miRNA:   3'- -CGucuAGG--GCGCuGGGUCUgUGACCG- -5'
2745 3' -57.1 NC_001491.2 + 112953 0.72 0.550392
Target:  5'- cGCGGG-CCCGUGACCCuuGACcagauaUGGCc -3'
miRNA:   3'- -CGUCUaGGGCGCUGGGu-CUGug----ACCG- -5'
2745 3' -57.1 NC_001491.2 + 114665 0.7 0.691009
Target:  5'- uCGGGUUCCaCGACCCGGACuuugaggagGGCg -3'
miRNA:   3'- cGUCUAGGGcGCUGGGUCUGuga------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.