Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2745 | 3' | -57.1 | NC_001491.2 | + | 117547 | 0.72 | 0.530755 |
Target: 5'- cCAGA-CCCa-GACCCAGGCACcGGCc -3' miRNA: 3'- cGUCUaGGGcgCUGGGUCUGUGaCCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 75192 | 0.67 | 0.846455 |
Target: 5'- cCAGAggCUCGCGAuccccuCCCAGACccacacCUGGUg -3' miRNA: 3'- cGUCUa-GGGCGCU------GGGUCUGu-----GACCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 87361 | 0.67 | 0.846455 |
Target: 5'- aGCAGAcgCCCagaaUGAucCCCAGACccCUGGCu -3' miRNA: 3'- -CGUCUa-GGGc---GCU--GGGUCUGu-GACCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 13924 | 0.67 | 0.838455 |
Target: 5'- cCGGggCUgGCGGCCuUGGGCGgUGGCa -3' miRNA: 3'- cGUCuaGGgCGCUGG-GUCUGUgACCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 132435 | 0.67 | 0.837645 |
Target: 5'- aCGGGUCuuGCGaauGCCUGGgcuucauaaaacuGCACUGGUa -3' miRNA: 3'- cGUCUAGggCGC---UGGGUC-------------UGUGACCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 146435 | 0.67 | 0.830272 |
Target: 5'- cGCGGAccgagggCgCCGgGGCCuCGGGCuguuGCUGGCu -3' miRNA: 3'- -CGUCUa------G-GGCgCUGG-GUCUG----UGACCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 72162 | 0.67 | 0.813387 |
Target: 5'- aUAGGUCCCGCGugagguCCCGGGgGCUc-- -3' miRNA: 3'- cGUCUAGGGCGCu-----GGGUCUgUGAccg -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 85995 | 0.67 | 0.804699 |
Target: 5'- aGCGGcGUCaaaCGCGGCCaCGGGCGgcGGCg -3' miRNA: 3'- -CGUC-UAGg--GCGCUGG-GUCUGUgaCCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 116321 | 0.67 | 0.804699 |
Target: 5'- -gGGggCCCG-GGCCCGGGC-CUcGGCc -3' miRNA: 3'- cgUCuaGGGCgCUGGGUCUGuGA-CCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 82939 | 0.67 | 0.846455 |
Target: 5'- aGCGGcgagcgccGUCCUGCGGUUgGGGCACgGGCu -3' miRNA: 3'- -CGUC--------UAGGGCGCUGGgUCUGUGaCCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 79344 | 0.66 | 0.861127 |
Target: 5'- aGCGcc-UCCGCGGUCCAGcggggucGCGCUGGCa -3' miRNA: 3'- -CGUcuaGGGCGCUGGGUC-------UGUGACCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 146218 | 0.66 | 0.861879 |
Target: 5'- gGCAGggCCCagaGCGcguuCCCGGcCGCcaUGGCg -3' miRNA: 3'- -CGUCuaGGG---CGCu---GGGUCuGUG--ACCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 40311 | 0.66 | 0.890259 |
Target: 5'- uGCAGAUCCUgauGCG-CgCGGGcCACcugGGCa -3' miRNA: 3'- -CGUCUAGGG---CGCuGgGUCU-GUGa--CCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 10280 | 0.66 | 0.883485 |
Target: 5'- aCAGc-CCCGCGcGCCaaacaCAGAUGCUGGUg -3' miRNA: 3'- cGUCuaGGGCGC-UGG-----GUCUGUGACCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 123528 | 0.66 | 0.876495 |
Target: 5'- -gGGAgCuuGCGGCCgCGGGCGCgcaGGUa -3' miRNA: 3'- cgUCUaGggCGCUGG-GUCUGUGa--CCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 95723 | 0.66 | 0.876495 |
Target: 5'- aGCuc-UCUgaCGCGcCCCAGAgACUGGUa -3' miRNA: 3'- -CGucuAGG--GCGCuGGGUCUgUGACCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 116744 | 0.66 | 0.869291 |
Target: 5'- cCGGGUCUgCGCGGCCCucgggccccGACGCaaGGCu -3' miRNA: 3'- cGUCUAGG-GCGCUGGGu--------CUGUGa-CCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 147815 | 0.66 | 0.869291 |
Target: 5'- uGguGcAUCCagGCGGCCCuccgucucagcGGGcCGCUGGCc -3' miRNA: 3'- -CguC-UAGGg-CGCUGGG-----------UCU-GUGACCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 91690 | 0.66 | 0.869291 |
Target: 5'- cGCuAGca-CgGCGuCCCuGACGCUGGCc -3' miRNA: 3'- -CG-UCuagGgCGCuGGGuCUGUGACCG- -5' |
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2745 | 3' | -57.1 | NC_001491.2 | + | 115822 | 0.66 | 0.861879 |
Target: 5'- -uGGAgCCgGCGGCCCAGGCcggagcCUcGGCc -3' miRNA: 3'- cgUCUaGGgCGCUGGGUCUGu-----GA-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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