miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27450 3' -59.3 NC_005869.1 + 15067 0.66 0.402914
Target:  5'- aCGCGGC-GCCGCGcgucGGUGAcGGuuACCCg -3'
miRNA:   3'- -GCGUCGaUGGUGCac--CCGCU-CC--UGGG- -5'
27450 3' -59.3 NC_005869.1 + 7725 0.66 0.393746
Target:  5'- aGguGCUGCCAgagggUGUcGGUGAGGcggGCCUg -3'
miRNA:   3'- gCguCGAUGGU-----GCAcCCGCUCC---UGGG- -5'
27450 3' -59.3 NC_005869.1 + 23627 0.66 0.393746
Target:  5'- gGCAGC-ACCcuggaGUGcuuccGGCGcGGGGCCCa -3'
miRNA:   3'- gCGUCGaUGGug---CAC-----CCGC-UCCUGGG- -5'
27450 3' -59.3 NC_005869.1 + 10734 0.66 0.384714
Target:  5'- uCGC-GCgGCCGCGUcagcgacGGCGAGGGCgaCCg -3'
miRNA:   3'- -GCGuCGaUGGUGCAc------CCGCUCCUG--GG- -5'
27450 3' -59.3 NC_005869.1 + 5789 0.66 0.384714
Target:  5'- cCGCGGUcguCgGCGUaGaGGaUGAGGGCCCa -3'
miRNA:   3'- -GCGUCGau-GgUGCA-C-CC-GCUCCUGGG- -5'
27450 3' -59.3 NC_005869.1 + 10328 0.66 0.375821
Target:  5'- gCGCGGgU-CCACugGUGGGCGcGGuuCCa -3'
miRNA:   3'- -GCGUCgAuGGUG--CACCCGCuCCugGG- -5'
27450 3' -59.3 NC_005869.1 + 16691 0.66 0.367067
Target:  5'- uGCGGC-GCCACGacGGCcuGGGGCCg -3'
miRNA:   3'- gCGUCGaUGGUGCacCCGc-UCCUGGg -5'
27450 3' -59.3 NC_005869.1 + 17781 0.66 0.358455
Target:  5'- uGCGGCUGCC-CGUGcggauGCGGaGACCg -3'
miRNA:   3'- gCGUCGAUGGuGCACc----CGCUcCUGGg -5'
27450 3' -59.3 NC_005869.1 + 11505 0.67 0.349985
Target:  5'- cCGCcgGGCgcugGCCGgGgaGGGCGAggaGGACCUg -3'
miRNA:   3'- -GCG--UCGa---UGGUgCa-CCCGCU---CCUGGG- -5'
27450 3' -59.3 NC_005869.1 + 16602 0.67 0.333476
Target:  5'- gCGCaucauucuGGCU-CCGCGccGGGCGGGccGGCCCc -3'
miRNA:   3'- -GCG--------UCGAuGGUGCa-CCCGCUC--CUGGG- -5'
27450 3' -59.3 NC_005869.1 + 16568 0.67 0.333476
Target:  5'- uGCAGaCgacGCUugG-GGGCcAGGACCUg -3'
miRNA:   3'- gCGUC-Ga--UGGugCaCCCGcUCCUGGG- -5'
27450 3' -59.3 NC_005869.1 + 4967 0.67 0.333476
Target:  5'- gGCAGgUGCCAgcCG-GGGUGAGGAg-- -3'
miRNA:   3'- gCGUCgAUGGU--GCaCCCGCUCCUggg -5'
27450 3' -59.3 NC_005869.1 + 10807 0.67 0.332666
Target:  5'- uCGCuugAGCUGCaCcCGUGGGUgccgcucGGGGGCCg -3'
miRNA:   3'- -GCG---UCGAUG-GuGCACCCG-------CUCCUGGg -5'
27450 3' -59.3 NC_005869.1 + 8315 0.67 0.325439
Target:  5'- aGCAacaccaccuGC-ACCACGUGcGCuGGGACCCc -3'
miRNA:   3'- gCGU---------CGaUGGUGCACcCGcUCCUGGG- -5'
27450 3' -59.3 NC_005869.1 + 11730 0.67 0.317546
Target:  5'- gGCGGCgGCgGCGgGGGUGAGcgcGGCCUc -3'
miRNA:   3'- gCGUCGaUGgUGCaCCCGCUC---CUGGG- -5'
27450 3' -59.3 NC_005869.1 + 8228 0.68 0.302194
Target:  5'- gGCGGCggGCCcuc-GGGCGGGGGguCCCa -3'
miRNA:   3'- gCGUCGa-UGGugcaCCCGCUCCU--GGG- -5'
27450 3' -59.3 NC_005869.1 + 8605 0.68 0.28025
Target:  5'- uCGCGGCgcagACgCgagGCGUGGGCGAuGACgCg -3'
miRNA:   3'- -GCGUCGa---UG-G---UGCACCCGCUcCUGgG- -5'
27450 3' -59.3 NC_005869.1 + 3251 0.68 0.266337
Target:  5'- uGCAGCUcACCA---GGGaccgGGGGGCCCg -3'
miRNA:   3'- gCGUCGA-UGGUgcaCCCg---CUCCUGGG- -5'
27450 3' -59.3 NC_005869.1 + 16654 0.68 0.265656
Target:  5'- cCGCAGCUcagcgcgGCCGCGgcgcuggagcGGGCGGcGGCCg -3'
miRNA:   3'- -GCGUCGA-------UGGUGCa---------CCCGCUcCUGGg -5'
27450 3' -59.3 NC_005869.1 + 10688 0.69 0.240193
Target:  5'- aCGCGGCcg-CGCGaggaGGGgGAGGGCCUg -3'
miRNA:   3'- -GCGUCGaugGUGCa---CCCgCUCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.