miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27450 5' -53.2 NC_005869.1 + 2304 0.66 0.720481
Target:  5'- -aGGCGCCcgaUCACCau---CCGCAGCa -3'
miRNA:   3'- ccCUGUGGa--AGUGGaugauGGCGUCG- -5'
27450 5' -53.2 NC_005869.1 + 6440 0.66 0.720481
Target:  5'- -uGGCGCUgccUCGCCcgagACUACgUGCAGCu -3'
miRNA:   3'- ccCUGUGGa--AGUGGa---UGAUG-GCGUCG- -5'
27450 5' -53.2 NC_005869.1 + 5566 0.66 0.720481
Target:  5'- -cGACACCgUUUgcgauGCUUGCgggcACCGCGGCc -3'
miRNA:   3'- ccCUGUGG-AAG-----UGGAUGa---UGGCGUCG- -5'
27450 5' -53.2 NC_005869.1 + 17052 0.66 0.720481
Target:  5'- cGGGAUGuCCcgCAcggcCCUGCgggGCaCGCGGCg -3'
miRNA:   3'- -CCCUGU-GGaaGU----GGAUGa--UG-GCGUCG- -5'
27450 5' -53.2 NC_005869.1 + 3540 0.66 0.720481
Target:  5'- aGGGGCGCC--CACC-ACU-CCGCcGUu -3'
miRNA:   3'- -CCCUGUGGaaGUGGaUGAuGGCGuCG- -5'
27450 5' -53.2 NC_005869.1 + 30877 0.66 0.720481
Target:  5'- cGGGA--CCUUCugCUACgUGCCcCAGa -3'
miRNA:   3'- -CCCUguGGAAGugGAUG-AUGGcGUCg -5'
27450 5' -53.2 NC_005869.1 + 8013 0.66 0.719365
Target:  5'- uGGAgACCUaCACCUggcACgGCCGCuucggaaAGCa -3'
miRNA:   3'- cCCUgUGGAaGUGGA---UGaUGGCG-------UCG- -5'
27450 5' -53.2 NC_005869.1 + 3234 0.66 0.716014
Target:  5'- cGGGGgGCCcgcagcgcgucugUCACUUucauCUGCCGCAccuGCg -3'
miRNA:   3'- -CCCUgUGGa------------AGUGGAu---GAUGGCGU---CG- -5'
27450 5' -53.2 NC_005869.1 + 33306 0.66 0.709287
Target:  5'- cGGAgGCCUcUCACCcGCaGCCaaCAGCa -3'
miRNA:   3'- cCCUgUGGA-AGUGGaUGaUGGc-GUCG- -5'
27450 5' -53.2 NC_005869.1 + 33546 0.66 0.698011
Target:  5'- cGGGACACuCUUCACaCUcaggagGCCGCc-- -3'
miRNA:   3'- -CCCUGUG-GAAGUG-GAuga---UGGCGucg -5'
27450 5' -53.2 NC_005869.1 + 19078 0.66 0.698011
Target:  5'- uGGcGACGCCgUCGauga-UGCCGCAGUg -3'
miRNA:   3'- -CC-CUGUGGaAGUggaugAUGGCGUCG- -5'
27450 5' -53.2 NC_005869.1 + 23419 0.66 0.691211
Target:  5'- aGGGGCugcacuGCCUgCACggGCUGCCcaugaucaacaaggaGCAGCu -3'
miRNA:   3'- -CCCUG------UGGAaGUGgaUGAUGG---------------CGUCG- -5'
27450 5' -53.2 NC_005869.1 + 24478 0.66 0.686665
Target:  5'- aGGGCGCC-UCGgCggcCU-CCGCGGCu -3'
miRNA:   3'- cCCUGUGGaAGUgGau-GAuGGCGUCG- -5'
27450 5' -53.2 NC_005869.1 + 23560 0.66 0.686665
Target:  5'- uGGGccccGCGCCggaagCACUccagggUGCUGCCGUccGGCa -3'
miRNA:   3'- -CCC----UGUGGaa---GUGG------AUGAUGGCG--UCG- -5'
27450 5' -53.2 NC_005869.1 + 10220 0.66 0.675262
Target:  5'- uGGGcUACCagCACCUGCUG-CGCcucuGCa -3'
miRNA:   3'- -CCCuGUGGaaGUGGAUGAUgGCGu---CG- -5'
27450 5' -53.2 NC_005869.1 + 12494 0.67 0.663814
Target:  5'- uGGGCACCUgcugaCACU--CUACCGCGagacGCu -3'
miRNA:   3'- cCCUGUGGAa----GUGGauGAUGGCGU----CG- -5'
27450 5' -53.2 NC_005869.1 + 17155 0.67 0.663814
Target:  5'- gGGGGCGCCUgcaggACUUggGCUGcCCGC-GCa -3'
miRNA:   3'- -CCCUGUGGAag---UGGA--UGAU-GGCGuCG- -5'
27450 5' -53.2 NC_005869.1 + 7249 0.67 0.652333
Target:  5'- aGGGGCAgugucCCUugUCcacgGCCaGCUcguagGCCGCGGCg -3'
miRNA:   3'- -CCCUGU-----GGA--AG----UGGaUGA-----UGGCGUCG- -5'
27450 5' -53.2 NC_005869.1 + 6891 0.67 0.652333
Target:  5'- -cGGCGCCUgggGCCgGCUGgCGCGGUa -3'
miRNA:   3'- ccCUGUGGAag-UGGaUGAUgGCGUCG- -5'
27450 5' -53.2 NC_005869.1 + 26250 0.67 0.652333
Target:  5'- cGGugGC--UCGgCUGCUGCUGguGCu -3'
miRNA:   3'- cCCugUGgaAGUgGAUGAUGGCguCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.