miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27452 3' -51.8 NC_005869.1 + 31452 0.66 0.783619
Target:  5'- gGCGGGGGAGgaagcaGCAGuucacGGAGGGGgAGUg -3'
miRNA:   3'- -UGUCCCCUC------UGUCu----CUUUUCUgUCGg -5'
27452 3' -51.8 NC_005869.1 + 12949 0.66 0.783619
Target:  5'- aGCAGGacGAGGgGGAGGA---GCGGCCc -3'
miRNA:   3'- -UGUCCc-CUCUgUCUCUUuucUGUCGG- -5'
27452 3' -51.8 NC_005869.1 + 27957 0.66 0.783619
Target:  5'- cGCGuGGGGAGGCu--GAAGcgcAGACcguGGCCu -3'
miRNA:   3'- -UGU-CCCCUCUGucuCUUU---UCUG---UCGG- -5'
27452 3' -51.8 NC_005869.1 + 8012 0.66 0.782562
Target:  5'- uCGGGGGAgccGAUGGGGcGGAAGGCGauggucuGCCa -3'
miRNA:   3'- uGUCCCCU---CUGUCUC-UUUUCUGU-------CGG- -5'
27452 3' -51.8 NC_005869.1 + 21927 0.66 0.782562
Target:  5'- uUAGGuGGuggcguucccGGCGGAGAAGggcgugcgcagguAGACGGCCu -3'
miRNA:   3'- uGUCC-CCu---------CUGUCUCUUU-------------UCUGUCGG- -5'
27452 3' -51.8 NC_005869.1 + 8363 0.66 0.772971
Target:  5'- uCGGGGGgcGGGCGcAGGAGGuGCAGCUg -3'
miRNA:   3'- uGUCCCC--UCUGUcUCUUUUcUGUCGG- -5'
27452 3' -51.8 NC_005869.1 + 23873 0.66 0.772971
Target:  5'- -gAGGaGGAGGacgaGGcuGAAGAGACGGCa -3'
miRNA:   3'- ugUCC-CCUCUg---UCu-CUUUUCUGUCGg -5'
27452 3' -51.8 NC_005869.1 + 810 0.66 0.762159
Target:  5'- -aAGaGGGGGACAGuaauGAGGAGGauauCAGCg -3'
miRNA:   3'- ugUC-CCCUCUGUCu---CUUUUCU----GUCGg -5'
27452 3' -51.8 NC_005869.1 + 5065 0.66 0.751194
Target:  5'- cCAGGGaGAGGagguGGGAGAGGGaggcgaaGGCCu -3'
miRNA:   3'- uGUCCC-CUCUgu--CUCUUUUCUg------UCGG- -5'
27452 3' -51.8 NC_005869.1 + 16622 0.66 0.751194
Target:  5'- cGCGGGGcuaGGGGCGGcgugggugcuGGAGcGGGCGGCUc -3'
miRNA:   3'- -UGUCCC---CUCUGUC----------UCUUuUCUGUCGG- -5'
27452 3' -51.8 NC_005869.1 + 32227 0.66 0.748985
Target:  5'- gGCAGGaGGAGGaGGAGGcagcaccuCAGCCg -3'
miRNA:   3'- -UGUCC-CCUCUgUCUCUuuucu---GUCGG- -5'
27452 3' -51.8 NC_005869.1 + 7410 0.66 0.740093
Target:  5'- cGCGGGcGGaAGGCGGGGuu-GGGCAGg- -3'
miRNA:   3'- -UGUCC-CC-UCUGUCUCuuuUCUGUCgg -5'
27452 3' -51.8 NC_005869.1 + 18283 0.66 0.740093
Target:  5'- uGCAGGGGaAGAUAGGu-GAGGuCAuuGCCu -3'
miRNA:   3'- -UGUCCCC-UCUGUCUcuUUUCuGU--CGG- -5'
27452 3' -51.8 NC_005869.1 + 7758 0.66 0.740093
Target:  5'- uGCAGGGcGuGccGCAGGGccuuGAAGGcGCGGCCg -3'
miRNA:   3'- -UGUCCC-CuC--UGUCUC----UUUUC-UGUCGG- -5'
27452 3' -51.8 NC_005869.1 + 11558 0.66 0.728867
Target:  5'- --uGGaGGAGGCGGAGGAGGaGgAGCUg -3'
miRNA:   3'- uguCC-CCUCUGUCUCUUUUcUgUCGG- -5'
27452 3' -51.8 NC_005869.1 + 20952 0.66 0.728867
Target:  5'- -aGGGuGGAGGCGGuGuu--GugGGCCa -3'
miRNA:   3'- ugUCC-CCUCUGUCuCuuuuCugUCGG- -5'
27452 3' -51.8 NC_005869.1 + 23957 0.67 0.720943
Target:  5'- cGCGGGGGAGGCcgcaagcgcGCGGCCu -3'
miRNA:   3'- -UGUCCCCUCUGucucuuuucUGUCGG- -5'
27452 3' -51.8 NC_005869.1 + 22672 0.67 0.706101
Target:  5'- -gAGGGGAuGGaGGGGAGccGACGGCg -3'
miRNA:   3'- ugUCCCCU-CUgUCUCUUuuCUGUCGg -5'
27452 3' -51.8 NC_005869.1 + 11724 0.67 0.706101
Target:  5'- aGCuGGGGcggcggcGGCGGGGguGAGcGCGGCCu -3'
miRNA:   3'- -UGuCCCCu------CUGUCUCuuUUC-UGUCGG- -5'
27452 3' -51.8 NC_005869.1 + 33601 0.67 0.694588
Target:  5'- -gAGaGGGGGCuGAuGGGAAGAUGGCCg -3'
miRNA:   3'- ugUCcCCUCUGuCU-CUUUUCUGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.