miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27453 5' -59 NC_005869.1 + 24466 0.66 0.355021
Target:  5'- --cGGCCUCCGcggcuGCGCCGggGGCGGCc- -3'
miRNA:   3'- gcaCCGGGGGU-----CGUGGUa-UCGCUGuu -5'
27453 5' -59 NC_005869.1 + 17441 0.66 0.346409
Target:  5'- gGUGGCCC--GGCGCCc--GCGGCGGu -3'
miRNA:   3'- gCACCGGGggUCGUGGuauCGCUGUU- -5'
27453 5' -59 NC_005869.1 + 13805 0.67 0.313472
Target:  5'- uCGguggGGCCCa-GGUACCGcGGCGGCAc -3'
miRNA:   3'- -GCa---CCGGGggUCGUGGUaUCGCUGUu -5'
27453 5' -59 NC_005869.1 + 22996 0.67 0.305618
Target:  5'- --cGGCCCagcaggGGCACC-UGGCGGCAGc -3'
miRNA:   3'- gcaCCGGGgg----UCGUGGuAUCGCUGUU- -5'
27453 5' -59 NC_005869.1 + 10694 0.67 0.290363
Target:  5'- gCGUcGCCCCCuccgcgcccagGGCGCCGgccGGCGGCu- -3'
miRNA:   3'- -GCAcCGGGGG-----------UCGUGGUa--UCGCUGuu -5'
27453 5' -59 NC_005869.1 + 28563 0.67 0.290363
Target:  5'- --aGGCCCaCCAGgGCCAUGaaGACGGa -3'
miRNA:   3'- gcaCCGGG-GGUCgUGGUAUcgCUGUU- -5'
27453 5' -59 NC_005869.1 + 22128 0.67 0.275713
Target:  5'- gCG-GGCUCCCGGCgacggccaGCCAgUGGCGGCc- -3'
miRNA:   3'- -GCaCCGGGGGUCG--------UGGU-AUCGCUGuu -5'
27453 5' -59 NC_005869.1 + 7401 0.68 0.268611
Target:  5'- --aGGaCCCCCAGCACCAguaCGuCAAg -3'
miRNA:   3'- gcaCC-GGGGGUCGUGGUaucGCuGUU- -5'
27453 5' -59 NC_005869.1 + 11750 0.69 0.229076
Target:  5'- gCGcGGCCUCCcuGGCGCCcgAGCGgGCGAc -3'
miRNA:   3'- -GCaCCGGGGG--UCGUGGuaUCGC-UGUU- -5'
27453 5' -59 NC_005869.1 + 11891 0.69 0.222985
Target:  5'- cCGUcGGCCgUCAGCGCCAUGauGCGccGCAGa -3'
miRNA:   3'- -GCA-CCGGgGGUCGUGGUAU--CGC--UGUU- -5'
27453 5' -59 NC_005869.1 + 31523 0.69 0.211217
Target:  5'- gGUGGCUcggcgcugcgCCCAGCGCUu--GCGGCAc -3'
miRNA:   3'- gCACCGG----------GGGUCGUGGuauCGCUGUu -5'
27453 5' -59 NC_005869.1 + 3768 0.74 0.092777
Target:  5'- gGUGGCgCCCGGCGCUggAGCGaACAc -3'
miRNA:   3'- gCACCGgGGGUCGUGGuaUCGC-UGUu -5'
27453 5' -59 NC_005869.1 + 17829 0.75 0.077788
Target:  5'- gCGUGGCgCCUCGGCGCagcGGCGGCAGg -3'
miRNA:   3'- -GCACCG-GGGGUCGUGguaUCGCUGUU- -5'
27453 5' -59 NC_005869.1 + 15299 1.05 0.000332
Target:  5'- gCGUGGCCCCCAGCACCAUAGCGACAAc -3'
miRNA:   3'- -GCACCGGGGGUCGUGGUAUCGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.