miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27456 3' -55.9 NC_005869.1 + 21031 0.66 0.528241
Target:  5'- cCCAgCCGCAACUG-GGCCgccuucCGCgGCUg -3'
miRNA:   3'- -GGU-GGCGUUGAUgCCGGac----GCGaUGG- -5'
27456 3' -55.9 NC_005869.1 + 18511 0.67 0.517421
Target:  5'- uCCGCCGCcugcCU-CGGCCacucccGCGC-GCCa -3'
miRNA:   3'- -GGUGGCGuu--GAuGCCGGa-----CGCGaUGG- -5'
27456 3' -55.9 NC_005869.1 + 24132 0.67 0.517421
Target:  5'- uUCACUGCAGCaGCGGCa-GCaGgaGCCc -3'
miRNA:   3'- -GGUGGCGUUGaUGCCGgaCG-CgaUGG- -5'
27456 3' -55.9 NC_005869.1 + 12639 0.67 0.517421
Target:  5'- aCCaACCgGCAGCgGCGGCUgccggcgGCGUaUGCCc -3'
miRNA:   3'- -GG-UGG-CGUUGaUGCCGGa------CGCG-AUGG- -5'
27456 3' -55.9 NC_005869.1 + 33387 0.67 0.50669
Target:  5'- aCCGCaucaGCAGCc-CGGUCUGCuguugGCUGCg -3'
miRNA:   3'- -GGUGg---CGUUGauGCCGGACG-----CGAUGg -5'
27456 3' -55.9 NC_005869.1 + 22028 0.67 0.50669
Target:  5'- gCCAUCGuCAAC-ACGGCCgccCGCcacACCg -3'
miRNA:   3'- -GGUGGC-GUUGaUGCCGGac-GCGa--UGG- -5'
27456 3' -55.9 NC_005869.1 + 7510 0.67 0.496056
Target:  5'- gCACCucGCGGCgguggGCGagcaCCUGCGCgGCCa -3'
miRNA:   3'- gGUGG--CGUUGa----UGCc---GGACGCGaUGG- -5'
27456 3' -55.9 NC_005869.1 + 10175 0.67 0.496056
Target:  5'- aCACgCGCGcCUACaGUcgaCUGCGCUACa -3'
miRNA:   3'- gGUG-GCGUuGAUGcCG---GACGCGAUGg -5'
27456 3' -55.9 NC_005869.1 + 13723 0.67 0.496056
Target:  5'- gCGaCGCuccCUGCGGCg-GCGCUGCUg -3'
miRNA:   3'- gGUgGCGuu-GAUGCCGgaCGCGAUGG- -5'
27456 3' -55.9 NC_005869.1 + 25753 0.67 0.496056
Target:  5'- gCCGCUGCAACcucUGCGcaCCgcacCGCUGCCu -3'
miRNA:   3'- -GGUGGCGUUG---AUGCc-GGac--GCGAUGG- -5'
27456 3' -55.9 NC_005869.1 + 8824 0.67 0.489724
Target:  5'- cCUACCGCGAaaacaGCGGggacguguccgagauCCUGCGCcaggugGCCa -3'
miRNA:   3'- -GGUGGCGUUga---UGCC---------------GGACGCGa-----UGG- -5'
27456 3' -55.9 NC_005869.1 + 5542 0.67 0.485524
Target:  5'- gCACCGCGGCccCGGCaagcuccGCGCcaaggGCCa -3'
miRNA:   3'- gGUGGCGUUGauGCCGga-----CGCGa----UGG- -5'
27456 3' -55.9 NC_005869.1 + 17890 0.67 0.475099
Target:  5'- cCUGCCGCcGCUGC-GCCgagGCGCcACg -3'
miRNA:   3'- -GGUGGCGuUGAUGcCGGa--CGCGaUGg -5'
27456 3' -55.9 NC_005869.1 + 8957 0.67 0.475099
Target:  5'- cCCGCgCGCGcaugACUACcugGGCCgguugaGCGCcACCa -3'
miRNA:   3'- -GGUG-GCGU----UGAUG---CCGGa-----CGCGaUGG- -5'
27456 3' -55.9 NC_005869.1 + 11198 0.67 0.475099
Target:  5'- aUCAgCaGCAGCUgcGCGGUCaGCGCgcgggACCg -3'
miRNA:   3'- -GGUgG-CGUUGA--UGCCGGaCGCGa----UGG- -5'
27456 3' -55.9 NC_005869.1 + 6668 0.67 0.475099
Target:  5'- cCUGCCaGCGGCggGCGGCCaggGCGCg--- -3'
miRNA:   3'- -GGUGG-CGUUGa-UGCCGGa--CGCGaugg -5'
27456 3' -55.9 NC_005869.1 + 3886 0.67 0.474062
Target:  5'- cCCACCccggagaGCGACccUGCGguGCCUGCuaCUACCa -3'
miRNA:   3'- -GGUGG-------CGUUG--AUGC--CGGACGc-GAUGG- -5'
27456 3' -55.9 NC_005869.1 + 11988 0.67 0.471993
Target:  5'- gCCAuCCGCccgGACga-GGCCggcaugguguacgaUGCGCUGCUg -3'
miRNA:   3'- -GGU-GGCG---UUGaugCCGG--------------ACGCGAUGG- -5'
27456 3' -55.9 NC_005869.1 + 14775 0.67 0.464787
Target:  5'- gCCACgG-AGCUACuGCCgcUGCGCUcCCg -3'
miRNA:   3'- -GGUGgCgUUGAUGcCGG--ACGCGAuGG- -5'
27456 3' -55.9 NC_005869.1 + 3203 0.67 0.464787
Target:  5'- uCUGCCGCAcCUGCGGCCagGgGUgauuguCCc -3'
miRNA:   3'- -GGUGGCGUuGAUGCCGGa-CgCGau----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.