Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27456 | 5' | -55.2 | NC_005869.1 | + | 7944 | 0.69 | 0.355986 |
Target: 5'- cGGGgGACGaggagcugcuggacGCCGC-GCUGCAGGUg- -3' miRNA: 3'- aCCCgUUGC--------------CGGCGaUGACGUUCAag -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 12709 | 0.7 | 0.332467 |
Target: 5'- aGGGCAuacgccgccgGCaGCCGCcGCUGCcGGUUg -3' miRNA: 3'- aCCCGU----------UGcCGGCGaUGACGuUCAAg -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 12904 | 0.7 | 0.332467 |
Target: 5'- uUGGGCGccaccGCGGCCGCgcgaUGgAAGUa- -3' miRNA: 3'- -ACCCGU-----UGCCGGCGaug-ACgUUCAag -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 12645 | 0.7 | 0.307697 |
Target: 5'- -cGGCAGCGGCgGCUGCcgGCGGcGUa- -3' miRNA: 3'- acCCGUUGCCGgCGAUGa-CGUU-CAag -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 16684 | 0.7 | 0.29976 |
Target: 5'- cGGGCGGCGGCCGCcgugcccCUGCc----- -3' miRNA: 3'- aCCCGUUGCCGGCGau-----GACGuucaag -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 23343 | 0.71 | 0.284362 |
Target: 5'- cGGGCAGCGcGCC-CUGC-GCGAGa-- -3' miRNA: 3'- aCCCGUUGC-CGGcGAUGaCGUUCaag -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 17630 | 0.72 | 0.248615 |
Target: 5'- gGGGCAugGGCUcggugaGCgGCUGCAGGc-- -3' miRNA: 3'- aCCCGUugCCGG------CGaUGACGUUCaag -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 8625 | 0.72 | 0.23539 |
Target: 5'- gUGGGCGaugacGCGGCgGUUGauguucuggauCUGCGGGUUCc -3' miRNA: 3'- -ACCCGU-----UGCCGgCGAU-----------GACGUUCAAG- -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 6807 | 0.72 | 0.23539 |
Target: 5'- gGGGUAgcaGCGGCCGCcGC-GCAGGcUCu -3' miRNA: 3'- aCCCGU---UGCCGGCGaUGaCGUUCaAG- -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 16317 | 0.72 | 0.229002 |
Target: 5'- -uGGCaAGCGGUCGCUGCUGgGGGagUCa -3' miRNA: 3'- acCCG-UUGCCGGCGAUGACgUUCa-AG- -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 10344 | 0.73 | 0.210712 |
Target: 5'- gGuGGCc-CGGCCGCUGCUGCAGc--- -3' miRNA: 3'- aC-CCGuuGCCGGCGAUGACGUUcaag -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 18802 | 0.73 | 0.193695 |
Target: 5'- cGcGGCucCGGCCGCgGCUccgGCGAGUUCc -3' miRNA: 3'- aC-CCGuuGCCGGCGaUGA---CGUUCAAG- -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 16465 | 0.73 | 0.193695 |
Target: 5'- aGGGCGGgGGaCCGCcGCUGCGGGc-- -3' miRNA: 3'- aCCCGUUgCC-GGCGaUGACGUUCaag -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 9901 | 0.76 | 0.129367 |
Target: 5'- gUGGGCuccuGCuGCCGCUGCUGCA-GUg- -3' miRNA: 3'- -ACCCGu---UGcCGGCGAUGACGUuCAag -5' |
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27456 | 5' | -55.2 | NC_005869.1 | + | 20675 | 1.09 | 0.000463 |
Target: 5'- cUGGGCAACGGCCGCUACUGCAAGUUCc -3' miRNA: 3'- -ACCCGUUGCCGGCGAUGACGUUCAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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