miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27457 5' -57.3 NC_005869.1 + 17249 0.66 0.448213
Target:  5'- cCUCCGUgGCGGugGGcGGCau-GAUgGAg -3'
miRNA:   3'- -GAGGCG-CGCCugCC-CCGguuUUAgUU- -5'
27457 5' -57.3 NC_005869.1 + 16599 0.66 0.438157
Target:  5'- -aCCGcCGCGGGCGccGGGCCAc------ -3'
miRNA:   3'- gaGGC-GCGCCUGC--CCCGGUuuuaguu -5'
27457 5' -57.3 NC_005869.1 + 10827 0.67 0.362668
Target:  5'- -gCUGCGCaacGACGGGGCCAuguGUUg- -3'
miRNA:   3'- gaGGCGCGc--CUGCCCCGGUuu-UAGuu -5'
27457 5' -57.3 NC_005869.1 + 18852 0.68 0.328458
Target:  5'- gUCCGCGCGcGCGGGuGgCAAAA-CAAa -3'
miRNA:   3'- gAGGCGCGCcUGCCC-CgGUUUUaGUU- -5'
27457 5' -57.3 NC_005869.1 + 8517 0.68 0.320287
Target:  5'- cCUCCGCGgccuCGGcgGCGGcGGCCGGucUCAGg -3'
miRNA:   3'- -GAGGCGC----GCC--UGCC-CCGGUUuuAGUU- -5'
27457 5' -57.3 NC_005869.1 + 5478 0.68 0.31227
Target:  5'- cCUUgGCGCGGAgcuugcCGGGGCCGcgGUg-- -3'
miRNA:   3'- -GAGgCGCGCCU------GCCCCGGUuuUAguu -5'
27457 5' -57.3 NC_005869.1 + 12183 0.68 0.31227
Target:  5'- -cCCGCaacgGUGGAgCGGGGCCAGGAg--- -3'
miRNA:   3'- gaGGCG----CGCCU-GCCCCGGUUUUaguu -5'
27457 5' -57.3 NC_005869.1 + 1933 0.69 0.274473
Target:  5'- aUCCGgcaGUGGcaGCGGGGCCGGGAUgCGGg -3'
miRNA:   3'- gAGGCg--CGCC--UGCCCCGGUUUUA-GUU- -5'
27457 5' -57.3 NC_005869.1 + 22059 0.69 0.267368
Target:  5'- gUCCGgGCGGAU--GGCCGAGGUCu- -3'
miRNA:   3'- gAGGCgCGCCUGccCCGGUUUUAGuu -5'
27457 5' -57.3 NC_005869.1 + 2031 0.7 0.246285
Target:  5'- gCUCCGUGagcacguugcaucCGGugGGGGCCGuGcgCAAc -3'
miRNA:   3'- -GAGGCGC-------------GCCugCCCCGGUuUuaGUU- -5'
27457 5' -57.3 NC_005869.1 + 16615 0.7 0.240428
Target:  5'- gCUCCGCGcCGGGCGGGccggccCCAGGccGUCGu -3'
miRNA:   3'- -GAGGCGC-GCCUGCCCc-----GGUUU--UAGUu -5'
27457 5' -57.3 NC_005869.1 + 9355 0.72 0.182916
Target:  5'- cCUCCGCGgGGACGGggggcgcaGGCCGGGGaCGg -3'
miRNA:   3'- -GAGGCGCgCCUGCC--------CCGGUUUUaGUu -5'
27457 5' -57.3 NC_005869.1 + 22892 0.72 0.172497
Target:  5'- -aCCGCGgGGugGGucacgcuGGCCAGAAUCu- -3'
miRNA:   3'- gaGGCGCgCCugCC-------CCGGUUUUAGuu -5'
27457 5' -57.3 NC_005869.1 + 162 0.73 0.150225
Target:  5'- gUCCGaG-GGGCGGGGUCAAAGUCGc -3'
miRNA:   3'- gAGGCgCgCCUGCCCCGGUUUUAGUu -5'
27457 5' -57.3 NC_005869.1 + 2319 0.75 0.114023
Target:  5'- aUCCGCaGCauguguuacaucaucGGgaACGGGGCCAAGAUCAAg -3'
miRNA:   3'- gAGGCG-CG---------------CC--UGCCCCGGUUUUAGUU- -5'
27457 5' -57.3 NC_005869.1 + 206 0.8 0.043588
Target:  5'- cCUCCGCG-GGGCGGGGCCGAGcggCGGa -3'
miRNA:   3'- -GAGGCGCgCCUGCCCCGGUUUua-GUU- -5'
27457 5' -57.3 NC_005869.1 + 20830 1.06 0.000525
Target:  5'- cCUCCGCGCGGACGGGGCCAAAAUCAAc -3'
miRNA:   3'- -GAGGCGCGCCUGCCCCGGUUUUAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.