miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27458 5' -61.8 NC_005869.1 + 17825 0.66 0.288197
Target:  5'- uUCCGCGuggcGCCUcggcgCAgCGgCGGCAgGCGg -3'
miRNA:   3'- -AGGCGC----CGGAa----GUgGCgGCCGUaCGC- -5'
27458 5' -61.8 NC_005869.1 + 25507 0.66 0.283915
Target:  5'- cCCGCcugagaccGGCCgcCGCCgccgaggccgcggagGCCGGCAcGCGg -3'
miRNA:   3'- aGGCG--------CCGGaaGUGG---------------CGGCCGUaCGC- -5'
27458 5' -61.8 NC_005869.1 + 30901 0.66 0.281088
Target:  5'- cCUGCGGCCaggggugauugUCcCCGCacaGGCAgGCGa -3'
miRNA:   3'- aGGCGCCGGa----------AGuGGCGg--CCGUaCGC- -5'
27458 5' -61.8 NC_005869.1 + 6161 0.66 0.27412
Target:  5'- aCCGUGGCCUUCuuGCagagaGUCGGgGaUGCa -3'
miRNA:   3'- aGGCGCCGGAAG--UGg----CGGCCgU-ACGc -5'
27458 5' -61.8 NC_005869.1 + 33569 0.66 0.26729
Target:  5'- aCCGCGGCCagCAgCaGUCGGuCGUGgGc -3'
miRNA:   3'- aGGCGCCGGaaGUgG-CGGCC-GUACgC- -5'
27458 5' -61.8 NC_005869.1 + 18800 0.66 0.26729
Target:  5'- gCCGCGGCUccgGCCGC-GGCuccgGCGa -3'
miRNA:   3'- aGGCGCCGGaagUGGCGgCCGua--CGC- -5'
27458 5' -61.8 NC_005869.1 + 20381 0.66 0.26729
Target:  5'- cCUGCGGCgg-CGCUGCUGGCAU-Ca -3'
miRNA:   3'- aGGCGCCGgaaGUGGCGGCCGUAcGc -5'
27458 5' -61.8 NC_005869.1 + 10157 0.66 0.26729
Target:  5'- -gCGCGGCC-UCuCCGCCcGuGCAggaGCGg -3'
miRNA:   3'- agGCGCCGGaAGuGGCGG-C-CGUa--CGC- -5'
27458 5' -61.8 NC_005869.1 + 17386 0.66 0.260599
Target:  5'- gCCGCGGCCgcgcugagcugcggCGCCacgacggccugggGCCGGCccGCc -3'
miRNA:   3'- aGGCGCCGGaa------------GUGG-------------CGGCCGuaCGc -5'
27458 5' -61.8 NC_005869.1 + 7287 0.66 0.260599
Target:  5'- gCgGCGGCCUUgCGgagGCUGGUGUGCGu -3'
miRNA:   3'- aGgCGCCGGAA-GUgg-CGGCCGUACGC- -5'
27458 5' -61.8 NC_005869.1 + 10990 0.66 0.259937
Target:  5'- -aCGCGGagacgcaCCUgcugaUGCCGCUGGUGUGCGa -3'
miRNA:   3'- agGCGCC-------GGAa----GUGGCGGCCGUACGC- -5'
27458 5' -61.8 NC_005869.1 + 24587 0.67 0.247626
Target:  5'- --gGCGGCCgcgccgUCACCgagaccaugcGCCG-CAUGCGg -3'
miRNA:   3'- aggCGCCGGa-----AGUGG----------CGGCcGUACGC- -5'
27458 5' -61.8 NC_005869.1 + 31427 0.67 0.241343
Target:  5'- cCCGaUGGCCUcCGCCGCCaGCuucagccaGUGCc -3'
miRNA:   3'- aGGC-GCCGGAaGUGGCGGcCG--------UACGc -5'
27458 5' -61.8 NC_005869.1 + 31976 0.67 0.235193
Target:  5'- aCCGCGGCCcggcugUugCGCaCGGCccccaccggAUGCa -3'
miRNA:   3'- aGGCGCCGGaa----GugGCG-GCCG---------UACGc -5'
27458 5' -61.8 NC_005869.1 + 4613 0.67 0.234585
Target:  5'- gUCCGCGGgCggCGgCGCgGGCGaagacguUGCGu -3'
miRNA:   3'- -AGGCGCCgGaaGUgGCGgCCGU-------ACGC- -5'
27458 5' -61.8 NC_005869.1 + 13316 0.67 0.229175
Target:  5'- gCCGcCGGCCgcCGCCGCCGcGCcucccGCu -3'
miRNA:   3'- aGGC-GCCGGaaGUGGCGGC-CGua---CGc -5'
27458 5' -61.8 NC_005869.1 + 28023 0.67 0.229175
Target:  5'- aCUGaCGGCCacgCACC-CCGGCccGCGc -3'
miRNA:   3'- aGGC-GCCGGaa-GUGGcGGCCGuaCGC- -5'
27458 5' -61.8 NC_005869.1 + 6041 0.68 0.206394
Target:  5'- cUUCGCaGGCCUcgUCACCGgaguccgcgucuCCGGCGucucgcgcUGCGg -3'
miRNA:   3'- -AGGCG-CCGGA--AGUGGC------------GGCCGU--------ACGC- -5'
27458 5' -61.8 NC_005869.1 + 23411 0.68 0.195755
Target:  5'- cUCCGC-GCCcagGgCGCCGGCcgGCGg -3'
miRNA:   3'- -AGGCGcCGGaagUgGCGGCCGuaCGC- -5'
27458 5' -61.8 NC_005869.1 + 23728 0.68 0.185598
Target:  5'- cCCGCGccuccGUCUcCGCCGUCGGCAUcGCc -3'
miRNA:   3'- aGGCGC-----CGGAaGUGGCGGCCGUA-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.