miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27460 3' -65.2 NC_005869.1 + 14901 0.66 0.176411
Target:  5'- cCAGGGuGUugUUGGUGGCcuGCUgCAGg -3'
miRNA:   3'- -GUCCC-CGugGACCGCCGu-CGGgGUCg -5'
27460 3' -65.2 NC_005869.1 + 17007 0.66 0.176411
Target:  5'- -cGGGaCAuCCcGGCcaGGCAGCCCC-GCa -3'
miRNA:   3'- guCCCcGU-GGaCCG--CCGUCGGGGuCG- -5'
27460 3' -65.2 NC_005869.1 + 4610 0.66 0.176411
Target:  5'- --uGGGU-CCgcgGGCGGCGGCgCgGGCg -3'
miRNA:   3'- gucCCCGuGGa--CCGCCGUCGgGgUCG- -5'
27460 3' -65.2 NC_005869.1 + 10674 0.66 0.167243
Target:  5'- --aGGGCGCCggccGGCGGCuucaucuGCCgCAGa -3'
miRNA:   3'- gucCCCGUGGa---CCGCCGu------CGGgGUCg -5'
27460 3' -65.2 NC_005869.1 + 6642 0.66 0.167243
Target:  5'- gAGGGGCucgggGCCgucgaGGCGGUccuGCCagCGGCg -3'
miRNA:   3'- gUCCCCG-----UGGa----CCGCCGu--CGGg-GUCG- -5'
27460 3' -65.2 NC_005869.1 + 16538 0.66 0.166795
Target:  5'- aCGGuGGGgACCagugaGGCGGUgggcucgucggcgGGCgCCCGGCg -3'
miRNA:   3'- -GUC-CCCgUGGa----CCGCCG-------------UCG-GGGUCG- -5'
27460 3' -65.2 NC_005869.1 + 3626 0.66 0.166795
Target:  5'- aGGuGGGCAUgaugcggcaggcgCUGGCGG-AGCUgCGGCa -3'
miRNA:   3'- gUC-CCCGUG-------------GACCGCCgUCGGgGUCG- -5'
27460 3' -65.2 NC_005869.1 + 15536 0.66 0.16282
Target:  5'- ---cGGCGCCgcgcGCGGCGGCgCCgGGCu -3'
miRNA:   3'- guccCCGUGGac--CGCCGUCG-GGgUCG- -5'
27460 3' -65.2 NC_005869.1 + 17443 0.66 0.158504
Target:  5'- -uGGcccGGCGCCc-GCGGCGGUUCCGGUg -3'
miRNA:   3'- guCC---CCGUGGacCGCCGUCGGGGUCG- -5'
27460 3' -65.2 NC_005869.1 + 5545 0.66 0.158504
Target:  5'- --cGGGCACC-----GCGGCCCCGGCa -3'
miRNA:   3'- gucCCCGUGGaccgcCGUCGGGGUCG- -5'
27460 3' -65.2 NC_005869.1 + 15264 0.66 0.158504
Target:  5'- gCGGcGGGCGCCcccguacaUGGagcgcaGGCccAGuCCCCAGCc -3'
miRNA:   3'- -GUC-CCCGUGG--------ACCg-----CCG--UC-GGGGUCG- -5'
27460 3' -65.2 NC_005869.1 + 3941 0.67 0.14776
Target:  5'- gCAGGGuCGCUcuccgggguggguggUGGUGGCGGCUgggcuuccacuCCAGCa -3'
miRNA:   3'- -GUCCCcGUGG---------------ACCGCCGUCGG-----------GGUCG- -5'
27460 3' -65.2 NC_005869.1 + 24719 0.67 0.146168
Target:  5'- aAGGGGguCCcacugGGCAGCCgCCAGUg -3'
miRNA:   3'- gUCCCCguGGaccg-CCGUCGG-GGUCG- -5'
27460 3' -65.2 NC_005869.1 + 5348 0.67 0.138437
Target:  5'- -uGGGGCugCUcGGUGGCcagGGUCCUcuugaGGCu -3'
miRNA:   3'- guCCCCGugGA-CCGCCG---UCGGGG-----UCG- -5'
27460 3' -65.2 NC_005869.1 + 17156 0.67 0.138437
Target:  5'- gGGGGGCGCCUgcaGGacuugGGCuGCCCgC-GCa -3'
miRNA:   3'- gUCCCCGUGGA---CCg----CCGuCGGG-GuCG- -5'
27460 3' -65.2 NC_005869.1 + 26771 0.67 0.131083
Target:  5'- cCAGGaaGGCcgcaGCagcGGCGGCAGCagaaCCAGCc -3'
miRNA:   3'- -GUCC--CCG----UGga-CCGCCGUCGg---GGUCG- -5'
27460 3' -65.2 NC_005869.1 + 16468 0.67 0.127542
Target:  5'- cCAGGGGCAUgggCUcGGUGaGCGGCUgCAGg -3'
miRNA:   3'- -GUCCCCGUG---GA-CCGC-CGUCGGgGUCg -5'
27460 3' -65.2 NC_005869.1 + 23231 0.67 0.127542
Target:  5'- gCAGcuGCACCacGuuGCGGCCCCAGCg -3'
miRNA:   3'- -GUCccCGUGGacCgcCGUCGGGGUCG- -5'
27460 3' -65.2 NC_005869.1 + 183 0.67 0.127542
Target:  5'- aAGGGGUggagcCCUGG-GGCGGUCCUccgcggGGCg -3'
miRNA:   3'- gUCCCCGu----GGACCgCCGUCGGGG------UCG- -5'
27460 3' -65.2 NC_005869.1 + 11605 0.67 0.127542
Target:  5'- cCGGGgaccgcGGCGCgUgaGGUGGCAGUCCCcGCu -3'
miRNA:   3'- -GUCC------CCGUGgA--CCGCCGUCGGGGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.