miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27460 3' -65.2 NC_005869.1 + 23003 1.09 0.000051
Target:  5'- gCAGGGGCACCUGGCGGCAGCCCCAGCc -3'
miRNA:   3'- -GUCCCCGUGGACCGCCGUCGGGGUCG- -5'
27460 3' -65.2 NC_005869.1 + 9540 0.79 0.015866
Target:  5'- gCGGGGGCGCCUucGaGCuGCGGCCCCGGg -3'
miRNA:   3'- -GUCCCCGUGGA--C-CGcCGUCGGGGUCg -5'
27460 3' -65.2 NC_005869.1 + 10704 0.77 0.022755
Target:  5'- aGGGGGaggGCCUGGCgcggcugucgggcgcGGCGGCCCCcgAGCg -3'
miRNA:   3'- gUCCCCg--UGGACCG---------------CCGUCGGGG--UCG- -5'
27460 3' -65.2 NC_005869.1 + 7601 0.76 0.024539
Target:  5'- gAGGGGCGgcCCgcgcaGGCGGCGGCgCCgCAGCu -3'
miRNA:   3'- gUCCCCGU--GGa----CCGCCGUCG-GG-GUCG- -5'
27460 3' -65.2 NC_005869.1 + 16741 0.76 0.024539
Target:  5'- gCAGGGGCAC--GGCGGCcgccgcccGCUCCAGCg -3'
miRNA:   3'- -GUCCCCGUGgaCCGCCGu-------CGGGGUCG- -5'
27460 3' -65.2 NC_005869.1 + 7505 0.74 0.03574
Target:  5'- gGGGGGCACCUcGCGGCGGUgggCgAGCa -3'
miRNA:   3'- gUCCCCGUGGAcCGCCGUCGg--GgUCG- -5'
27460 3' -65.2 NC_005869.1 + 18609 0.73 0.046298
Target:  5'- gCGGcGGGCGCUUGGCGGgAcGUCCC-GCg -3'
miRNA:   3'- -GUC-CCCGUGGACCGCCgU-CGGGGuCG- -5'
27460 3' -65.2 NC_005869.1 + 13295 0.72 0.051326
Target:  5'- cCAGGcugucGGCGCCgcuggccaggcugGaGCGGCgcgAGCCCCAGCg -3'
miRNA:   3'- -GUCC-----CCGUGGa------------C-CGCCG---UCGGGGUCG- -5'
27460 3' -65.2 NC_005869.1 + 16039 0.72 0.051916
Target:  5'- cCAGcGGCGCCUGG-GGCGcGUgCCCAGCa -3'
miRNA:   3'- -GUCcCCGUGGACCgCCGU-CG-GGGUCG- -5'
27460 3' -65.2 NC_005869.1 + 15422 0.72 0.051916
Target:  5'- -uGGcGGCGCC-GGCGGCggguGGCgCCGGCg -3'
miRNA:   3'- guCC-CCGUGGaCCGCCG----UCGgGGUCG- -5'
27460 3' -65.2 NC_005869.1 + 13378 0.72 0.053421
Target:  5'- gCGGGaGGCGCggcGGCGGCGGCCggCGGCg -3'
miRNA:   3'- -GUCC-CCGUGga-CCGCCGUCGGg-GUCG- -5'
27460 3' -65.2 NC_005869.1 + 2941 0.72 0.053421
Target:  5'- uGGGcGGcCGCCUGgGCaGCuucAGCCCCAGCc -3'
miRNA:   3'- gUCC-CC-GUGGAC-CGcCG---UCGGGGUCG- -5'
27460 3' -65.2 NC_005869.1 + 21481 0.72 0.05656
Target:  5'- --cGGGCACCUGGCGGCacaugGGCUCaaaguuGCg -3'
miRNA:   3'- gucCCCGUGGACCGCCG-----UCGGGgu----CG- -5'
27460 3' -65.2 NC_005869.1 + 8564 0.71 0.061605
Target:  5'- cCAGGGGCACg-GGCGcGUugAGCUCgGGCa -3'
miRNA:   3'- -GUCCCCGUGgaCCGC-CG--UCGGGgUCG- -5'
27460 3' -65.2 NC_005869.1 + 8229 0.71 0.061605
Target:  5'- gCGGcGGGC-CCUcgGGCgGGgGGUCCCAGCg -3'
miRNA:   3'- -GUC-CCCGuGGA--CCG-CCgUCGGGGUCG- -5'
27460 3' -65.2 NC_005869.1 + 15562 0.71 0.067084
Target:  5'- gCGGuGGcGCGCCggaGGCGG-AGCaCCCGGCg -3'
miRNA:   3'- -GUC-CC-CGUGGa--CCGCCgUCG-GGGUCG- -5'
27460 3' -65.2 NC_005869.1 + 24480 0.71 0.067084
Target:  5'- -cGaGGGCGCCUcGGCGGCcuCCgCGGCu -3'
miRNA:   3'- guC-CCCGUGGA-CCGCCGucGGgGUCG- -5'
27460 3' -65.2 NC_005869.1 + 16922 0.71 0.069013
Target:  5'- -uGGaGGCGCCccUGGUGGCcauGCCCguGCu -3'
miRNA:   3'- guCC-CCGUGG--ACCGCCGu--CGGGguCG- -5'
27460 3' -65.2 NC_005869.1 + 27166 0.71 0.070995
Target:  5'- -cGGaGGCACC-GGCGGCAcGCCCagauuguGGCu -3'
miRNA:   3'- guCC-CCGUGGaCCGCCGU-CGGGg------UCG- -5'
27460 3' -65.2 NC_005869.1 + 9368 0.7 0.075124
Target:  5'- gGGGGGCGCa-GGCcggGGaCGGCgCCGGCg -3'
miRNA:   3'- gUCCCCGUGgaCCG---CC-GUCGgGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.