miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27460 5' -58.2 NC_005869.1 + 24476 0.66 0.397529
Target:  5'- gGCGCCucGGCGGCcUCcGCGGcUGCGcCg -3'
miRNA:   3'- -UGUGG--UCGCCGuAGuCGUCcACGCaG- -5'
27460 5' -58.2 NC_005869.1 + 16173 0.66 0.397529
Target:  5'- aGC-CCGGCGGCAgCGGCGGGcccGCc-- -3'
miRNA:   3'- -UGuGGUCGCCGUaGUCGUCCa--CGcag -5'
27460 5' -58.2 NC_005869.1 + 12472 0.66 0.388178
Target:  5'- aGCAgCAGCcggguguugGGCGUCAGCAGGgaggacaCGUg -3'
miRNA:   3'- -UGUgGUCG---------CCGUAGUCGUCCac-----GCAg -5'
27460 5' -58.2 NC_005869.1 + 13370 0.66 0.37806
Target:  5'- cGCGgCGGCGGCGgccggCGGCggcgccuGGGUGC-UCg -3'
miRNA:   3'- -UGUgGUCGCCGUa----GUCG-------UCCACGcAG- -5'
27460 5' -58.2 NC_005869.1 + 17357 0.66 0.37624
Target:  5'- -aACCAGCGuGCuagCccaccgcacacccaGGCAGGUGCGg- -3'
miRNA:   3'- ugUGGUCGC-CGua-G--------------UCGUCCACGCag -5'
27460 5' -58.2 NC_005869.1 + 26781 0.66 0.368122
Target:  5'- cGCAgCAGCGGCggCAGCAGaaccagcccaCGUCa -3'
miRNA:   3'- -UGUgGUCGCCGuaGUCGUCcac-------GCAG- -5'
27460 5' -58.2 NC_005869.1 + 14186 0.67 0.352249
Target:  5'- cUACCuGGCGGUGgggcggCAGCAGG-GgGUCa -3'
miRNA:   3'- uGUGG-UCGCCGUa-----GUCGUCCaCgCAG- -5'
27460 5' -58.2 NC_005869.1 + 7689 0.67 0.351382
Target:  5'- uGCGCCAGCucGGCgagGUCuggguugugggccAGCAGGUGCu-- -3'
miRNA:   3'- -UGUGGUCG--CCG---UAG-------------UCGUCCACGcag -5'
27460 5' -58.2 NC_005869.1 + 13659 0.67 0.343643
Target:  5'- gAUGCCAGCaGCGccgCcGCAGGgaGCGUCg -3'
miRNA:   3'- -UGUGGUCGcCGUa--GuCGUCCa-CGCAG- -5'
27460 5' -58.2 NC_005869.1 + 10156 0.67 0.335189
Target:  5'- gUugCAGaGGCG-CAGCAGGUGCu-- -3'
miRNA:   3'- uGugGUCgCCGUaGUCGUCCACGcag -5'
27460 5' -58.2 NC_005869.1 + 15418 0.67 0.310747
Target:  5'- gGCGCCGGCGGCGggUGGCGccGGcgaucGCGUUg -3'
miRNA:   3'- -UGUGGUCGCCGUa-GUCGU--CCa----CGCAG- -5'
27460 5' -58.2 NC_005869.1 + 21479 0.67 0.309956
Target:  5'- gGCACCuGGCGGCAcaugggcucaaagUUgcgcaggaaggAGUAGGUGCGgUCg -3'
miRNA:   3'- -UGUGG-UCGCCGU-------------AG-----------UCGUCCACGC-AG- -5'
27460 5' -58.2 NC_005869.1 + 6564 0.68 0.295219
Target:  5'- gACGuCCAGCuGGUccucGUCGGgGGGgucgGCGUCg -3'
miRNA:   3'- -UGU-GGUCG-CCG----UAGUCgUCCa---CGCAG- -5'
27460 5' -58.2 NC_005869.1 + 8091 0.68 0.26599
Target:  5'- --cCCGGCGGCGcacggAGCAGGUGUGg- -3'
miRNA:   3'- uguGGUCGCCGUag---UCGUCCACGCag -5'
27460 5' -58.2 NC_005869.1 + 23921 0.69 0.252275
Target:  5'- cGCGCCGGCugGGgGUCGcGaCAGGaGCGUCg -3'
miRNA:   3'- -UGUGGUCG--CCgUAGU-C-GUCCaCGCAG- -5'
27460 5' -58.2 NC_005869.1 + 24699 0.69 0.252275
Target:  5'- cCGCCAGUGcGCGUCGGCucguGG-GCGg- -3'
miRNA:   3'- uGUGGUCGC-CGUAGUCGu---CCaCGCag -5'
27460 5' -58.2 NC_005869.1 + 26658 0.69 0.232801
Target:  5'- gGCGCCAG-GaGCGUCGGCGGGccgaggGCGg- -3'
miRNA:   3'- -UGUGGUCgC-CGUAGUCGUCCa-----CGCag -5'
27460 5' -58.2 NC_005869.1 + 9882 0.69 0.226596
Target:  5'- gGCAcgucCCGGuCGGCGUCcaGGUGGGUGCGa- -3'
miRNA:   3'- -UGU----GGUC-GCCGUAG--UCGUCCACGCag -5'
27460 5' -58.2 NC_005869.1 + 6670 0.7 0.208819
Target:  5'- -uGCCAGCGGCGggCGGCcaGGGcGCGgUCg -3'
miRNA:   3'- ugUGGUCGCCGUa-GUCG--UCCaCGC-AG- -5'
27460 5' -58.2 NC_005869.1 + 16472 0.7 0.194399
Target:  5'- gACACCAGgGGCAugggcUCGGUgagcggcugcaggcuGGGUGUGUg -3'
miRNA:   3'- -UGUGGUCgCCGU-----AGUCG---------------UCCACGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.