miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27461 5' -57.3 NC_005869.1 + 13462 0.66 0.497494
Target:  5'- cGGGGCCCUCgaagaCGAcGaGGAGGAGGaaGa -3'
miRNA:   3'- -CCUCGGGAG-----GCU-CaUCUUCUCCggCg -5'
27461 5' -57.3 NC_005869.1 + 31004 0.66 0.495394
Target:  5'- uGGAGCgggugguguaCCGGGUggccugggaaGGggGAGGCCGg -3'
miRNA:   3'- -CCUCGgga-------GGCUCA----------UCuuCUCCGGCg -5'
27461 5' -57.3 NC_005869.1 + 13163 0.66 0.487035
Target:  5'- aGGAuGCCCgggaCGGGacgcgcgAGAGGccgggguggaGGGCCGCg -3'
miRNA:   3'- -CCU-CGGGag--GCUCa------UCUUC----------UCCGGCG- -5'
27461 5' -57.3 NC_005869.1 + 24401 0.66 0.476682
Target:  5'- aGGAggccGCCC-CCGGcGcAGccgcGGAGGCCGCc -3'
miRNA:   3'- -CCU----CGGGaGGCU-CaUCu---UCUCCGGCG- -5'
27461 5' -57.3 NC_005869.1 + 3939 0.66 0.466438
Target:  5'- aGGGucGCUCUCCgGGGUGGGugguGGuGGCgGCu -3'
miRNA:   3'- -CCU--CGGGAGG-CUCAUCU----UCuCCGgCG- -5'
27461 5' -57.3 NC_005869.1 + 16763 0.66 0.45631
Target:  5'- aGGucGUCCUCCGuguccGGUGGcAGGGGCacgGCg -3'
miRNA:   3'- -CCu-CGGGAGGC-----UCAUCuUCUCCGg--CG- -5'
27461 5' -57.3 NC_005869.1 + 5343 0.66 0.45631
Target:  5'- cGGGCCCUCCGGcccUGGAAGGaccGGacccuccacCCGCu -3'
miRNA:   3'- cCUCGGGAGGCUc--AUCUUCU---CC---------GGCG- -5'
27461 5' -57.3 NC_005869.1 + 6898 0.67 0.436417
Target:  5'- uGGGGCCggCUGgcgcGGUAGAGGA-GCUGCu -3'
miRNA:   3'- -CCUCGGgaGGC----UCAUCUUCUcCGGCG- -5'
27461 5' -57.3 NC_005869.1 + 21175 0.67 0.436417
Target:  5'- uGGAGCCC---GAGUAGGuaaaguAGGGGUCGa -3'
miRNA:   3'- -CCUCGGGaggCUCAUCU------UCUCCGGCg -5'
27461 5' -57.3 NC_005869.1 + 6508 0.67 0.436417
Target:  5'- aGGGGCUCguuggUCC-AGcAGAGGcGGCCGCc -3'
miRNA:   3'- -CCUCGGG-----AGGcUCaUCUUCuCCGGCG- -5'
27461 5' -57.3 NC_005869.1 + 3849 0.67 0.426659
Target:  5'- uGAGCCUgCUgGAGUGGAAGcccaGCCGCc -3'
miRNA:   3'- cCUCGGGaGG-CUCAUCUUCuc--CGGCG- -5'
27461 5' -57.3 NC_005869.1 + 22709 0.67 0.407538
Target:  5'- uGGGGCCCccacuugaacUCgGGcaccGUcAGuGGAGGCCGCg -3'
miRNA:   3'- -CCUCGGG----------AGgCU----CA-UCuUCUCCGGCG- -5'
27461 5' -57.3 NC_005869.1 + 22361 0.68 0.379887
Target:  5'- uGGGGCUgUCgGGGUAGcGGgcaaAGGCgGCg -3'
miRNA:   3'- -CCUCGGgAGgCUCAUCuUC----UCCGgCG- -5'
27461 5' -57.3 NC_005869.1 + 7648 0.68 0.345022
Target:  5'- gGGGGUCCUCgGGGUcGuccGGcAGGCCGg -3'
miRNA:   3'- -CCUCGGGAGgCUCAuCu--UC-UCCGGCg -5'
27461 5' -57.3 NC_005869.1 + 22102 0.69 0.336673
Target:  5'- uGGcGgCCUCCGGuGUGGcGGGcGGCCGUg -3'
miRNA:   3'- -CCuCgGGAGGCU-CAUCuUCU-CCGGCG- -5'
27461 5' -57.3 NC_005869.1 + 5706 0.69 0.328472
Target:  5'- uGAGCUCgcguccggCgCGGGUgaGGAAGAGGCUGUc -3'
miRNA:   3'- cCUCGGGa-------G-GCUCA--UCUUCUCCGGCG- -5'
27461 5' -57.3 NC_005869.1 + 14458 0.69 0.320419
Target:  5'- -aAGCCCUCCuGGUAGggGuAGcGCUuGCg -3'
miRNA:   3'- ccUCGGGAGGcUCAUCuuC-UC-CGG-CG- -5'
27461 5' -57.3 NC_005869.1 + 24285 0.69 0.312515
Target:  5'- cGAGCCCcgCCGGGacGAGGAGGa-GCa -3'
miRNA:   3'- cCUCGGGa-GGCUCauCUUCUCCggCG- -5'
27461 5' -57.3 NC_005869.1 + 18525 0.69 0.312515
Target:  5'- -aGGUCCUCgGGG-GGAGGAGGCaGCu -3'
miRNA:   3'- ccUCGGGAGgCUCaUCUUCUCCGgCG- -5'
27461 5' -57.3 NC_005869.1 + 15442 0.69 0.304761
Target:  5'- -cGGCCCUCCGAcGUcGAcGAuGGCgGCg -3'
miRNA:   3'- ccUCGGGAGGCU-CAuCUuCU-CCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.