Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27462 | 3' | -58.8 | NC_005869.1 | + | 7249 | 0.66 | 0.340866 |
Target: 5'- --aCGUGGgcugguUCUGCUGCCGCcgCUGCUg -3' miRNA: 3'- uagGUACC------GGGCGACGGUGaaGACGA- -5' |
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27462 | 3' | -58.8 | NC_005869.1 | + | 7844 | 0.66 | 0.315994 |
Target: 5'- -gCgGUGGCUCgGCUGCUGCUggUGCUg -3' miRNA: 3'- uaGgUACCGGG-CGACGGUGAagACGA- -5' |
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27462 | 3' | -58.8 | NC_005869.1 | + | 32102 | 0.67 | 0.308013 |
Target: 5'- cAUCCcgGcCCCGCUGCCACU---GCc -3' miRNA: 3'- -UAGGuaCcGGGCGACGGUGAagaCGa -5' |
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27462 | 3' | -58.8 | NC_005869.1 | + | 30859 | 0.67 | 0.277635 |
Target: 5'- -aCCGgggGGCCCGCagcgcgucUGUCACUuucaUCUGCc -3' miRNA: 3'- uaGGUa--CCGGGCG--------ACGGUGA----AGACGa -5' |
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27462 | 3' | -58.8 | NC_005869.1 | + | 10342 | 0.67 | 0.277635 |
Target: 5'- -gCgGUGGCCCG--GCCGCUgCUGCa -3' miRNA: 3'- uaGgUACCGGGCgaCGGUGAaGACGa -5' |
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27462 | 3' | -58.8 | NC_005869.1 | + | 9897 | 0.73 | 0.104002 |
Target: 5'- uUCgGUGGgcuCCUGCUGCCGCUgCUGCa -3' miRNA: 3'- uAGgUACC---GGGCGACGGUGAaGACGa -5' |
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27462 | 3' | -58.8 | NC_005869.1 | + | 23657 | 1.05 | 0.000332 |
Target: 5'- gAUCCAUGGCCCGCUGCCACUUCUGCUc -3' miRNA: 3'- -UAGGUACCGGGCGACGGUGAAGACGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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