miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27462 5' -63.1 NC_005869.1 + 19082 0.67 0.20328
Target:  5'- --cGCaGCGGCAGCGuGCCGuGGuCCGUCa -3'
miRNA:   3'- gguCGaCGUCGUCGC-CGGC-CC-GGUGG- -5'
27462 5' -63.1 NC_005869.1 + 17446 0.67 0.20328
Target:  5'- cCCGGC-GCccGCGGCGGuuCCGGuGCCuCCc -3'
miRNA:   3'- -GGUCGaCGu-CGUCGCC--GGCC-CGGuGG- -5'
27462 5' -63.1 NC_005869.1 + 11832 0.67 0.20328
Target:  5'- aCgAGCgUGaGGCAGCGGuCCGGGgUGCUc -3'
miRNA:   3'- -GgUCG-ACgUCGUCGCC-GGCCCgGUGG- -5'
27462 5' -63.1 NC_005869.1 + 12602 0.67 0.197995
Target:  5'- -----cGCGGC-GCGGCUGcaGGCCACCc -3'
miRNA:   3'- ggucgaCGUCGuCGCCGGC--CCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 24762 0.67 0.197995
Target:  5'- -aAGaagagGCGGCGGUGGCCGGacccaGCaCGCCc -3'
miRNA:   3'- ggUCga---CGUCGUCGCCGGCC-----CG-GUGG- -5'
27462 5' -63.1 NC_005869.1 + 24070 0.67 0.197473
Target:  5'- gCAGCgcaUGCAGCAGgccauccUGGCCGagcgcgugguGGCCgACCu -3'
miRNA:   3'- gGUCG---ACGUCGUC-------GCCGGC----------CCGG-UGG- -5'
27462 5' -63.1 NC_005869.1 + 1739 0.67 0.196433
Target:  5'- aCCuGCUGgGGgAGUugagcgagcgcacgGGCCGGG-CACCu -3'
miRNA:   3'- -GGuCGACgUCgUCG--------------CCGGCCCgGUGG- -5'
27462 5' -63.1 NC_005869.1 + 21879 0.67 0.19232
Target:  5'- gCAGCgagGCgaugaaggcauucAGC-GCGGCCaGGCUGCCc -3'
miRNA:   3'- gGUCGa--CG-------------UCGuCGCCGGcCCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 21664 0.67 0.191304
Target:  5'- cCCGcGCUcccCAGCGGgGGCCugcagcccccacagGGGCCGCa -3'
miRNA:   3'- -GGU-CGAc--GUCGUCgCCGG--------------CCCGGUGg -5'
27462 5' -63.1 NC_005869.1 + 32431 0.67 0.187784
Target:  5'- gCCAGCUGCAcGCGcucauGUcGCUGGGaguaCACCc -3'
miRNA:   3'- -GGUCGACGU-CGU-----CGcCGGCCCg---GUGG- -5'
27462 5' -63.1 NC_005869.1 + 26174 0.67 0.182854
Target:  5'- gCCGcGCUGCAgGUGGUGGCCGuccagaGcCCGCCu -3'
miRNA:   3'- -GGU-CGACGU-CGUCGCCGGCc-----C-GGUGG- -5'
27462 5' -63.1 NC_005869.1 + 1623 0.67 0.182854
Target:  5'- gCAGCUgGCAGCGgugaagguGCGGgaGGGCUAUg -3'
miRNA:   3'- gGUCGA-CGUCGU--------CGCCggCCCGGUGg -5'
27462 5' -63.1 NC_005869.1 + 22810 0.67 0.182854
Target:  5'- aCCAGgUccacCAGcCAGCGGCucuCGGGCgCGCCc -3'
miRNA:   3'- -GGUCgAc---GUC-GUCGCCG---GCCCG-GUGG- -5'
27462 5' -63.1 NC_005869.1 + 1948 0.67 0.182854
Target:  5'- gCAGCaGUAGCAGUGGuggcgaaccCCGuGCCACUu -3'
miRNA:   3'- gGUCGaCGUCGUCGCC---------GGCcCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 1854 0.67 0.179951
Target:  5'- -uGGCggaGCAGguGCGGCagGGGCUgugcaucaucaggauGCCg -3'
miRNA:   3'- ggUCGa--CGUCguCGCCGg-CCCGG---------------UGG- -5'
27462 5' -63.1 NC_005869.1 + 16475 0.68 0.173337
Target:  5'- aCCGccGCUGCG--GGCGGgCGGcgcuGCCACCg -3'
miRNA:   3'- -GGU--CGACGUcgUCGCCgGCC----CGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 2050 0.68 0.173337
Target:  5'- uCCGGUgGgGGCcguGCGcaacaGCCGGGCCGCg -3'
miRNA:   3'- -GGUCGaCgUCGu--CGC-----CGGCCCGGUGg -5'
27462 5' -63.1 NC_005869.1 + 9581 0.68 0.173337
Target:  5'- -gGGCcGCuuccaGGCGGCGGCUGagcuccGCCACCg -3'
miRNA:   3'- ggUCGaCG-----UCGUCGCCGGCc-----CGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 17569 0.68 0.173337
Target:  5'- gCCcGCccGCAGCGGCGGUCccccgcccucGGCUGCCg -3'
miRNA:   3'- -GGuCGa-CGUCGUCGCCGGc---------CCGGUGG- -5'
27462 5' -63.1 NC_005869.1 + 7842 0.68 0.168746
Target:  5'- uCCAGC-GCuGCAgGCGGgCucuggacGGCCACCa -3'
miRNA:   3'- -GGUCGaCGuCGU-CGCCgGc------CCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.