miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27463 3' -65.4 NC_005869.1 + 27903 0.72 0.059211
Target:  5'- uGCGCUU-CaGCCUCCCCaCGCGCUacaGCg -3'
miRNA:   3'- -CGCGAAcGcCGGAGGGG-GCGCGGc--CG- -5'
27463 3' -65.4 NC_005869.1 + 16674 0.71 0.076115
Target:  5'- gGCGCUggagcgggcgGCGGCCgccgugCCCCUGCcaCCGGa -3'
miRNA:   3'- -CGCGAa---------CGCCGGa-----GGGGGCGc-GGCCg -5'
27463 3' -65.4 NC_005869.1 + 8487 0.71 0.080456
Target:  5'- gGCGCUcgaGCaGGag-CCCCCGCguGCCGGCc -3'
miRNA:   3'- -CGCGAa--CG-CCggaGGGGGCG--CGGCCG- -5'
27463 3' -65.4 NC_005869.1 + 23540 0.7 0.084799
Target:  5'- uGCGCUcGUucagccaGGCUUgggCCCCGCGCCGGa -3'
miRNA:   3'- -CGCGAaCG-------CCGGAg--GGGGCGCGGCCg -5'
27463 3' -65.4 NC_005869.1 + 11489 0.7 0.085034
Target:  5'- -aGCUcaUGUuuGGCCUCCgCCggGCGCUGGCc -3'
miRNA:   3'- cgCGA--ACG--CCGGAGGgGG--CGCGGCCG- -5'
27463 3' -65.4 NC_005869.1 + 11970 0.69 0.103084
Target:  5'- cGCGCUguggagaccuCGGCCaUCCgCCCGgacgagGCCGGCa -3'
miRNA:   3'- -CGCGAac--------GCCGG-AGG-GGGCg-----CGGCCG- -5'
27463 3' -65.4 NC_005869.1 + 17575 0.68 0.138865
Target:  5'- cCGCa-GCGGCggUCCCCCGCcCuCGGCu -3'
miRNA:   3'- cGCGaaCGCCGg-AGGGGGCGcG-GCCG- -5'
27463 3' -65.4 NC_005869.1 + 17422 0.68 0.137753
Target:  5'- cGCGCgccccggugguuccgGUGGCCcggCgCCCGCGgCGGUu -3'
miRNA:   3'- -CGCGaa-------------CGCCGGa--GgGGGCGCgGCCG- -5'
27463 3' -65.4 NC_005869.1 + 17495 0.68 0.131605
Target:  5'- cGCGCgccgcgUGC-GCCUcgcgCCCCCagaGCGCCucGGCg -3'
miRNA:   3'- -CGCGa-----ACGcCGGA----GGGGG---CGCGG--CCG- -5'
27463 3' -65.4 NC_005869.1 + 7845 0.68 0.118125
Target:  5'- aGCGCUgcagGCGGgCUCUggacggccaccaCCUGCaGCgCGGCg -3'
miRNA:   3'- -CGCGAa---CGCCgGAGG------------GGGCG-CG-GCCG- -5'
27463 3' -65.4 NC_005869.1 + 16947 0.69 0.114961
Target:  5'- cGUGCUccggGCcaccaccgccGuGCCgagCCCCCGCGCCGcGUg -3'
miRNA:   3'- -CGCGAa---CG----------C-CGGa--GGGGGCGCGGC-CG- -5'
27463 3' -65.4 NC_005869.1 + 15590 0.69 0.108871
Target:  5'- -gGCg-GCGGCgCaggCgCUCCGCGCCGGCc -3'
miRNA:   3'- cgCGaaCGCCG-Ga--G-GGGGCGCGGCCG- -5'
27463 3' -65.4 NC_005869.1 + 23005 0.66 0.171708
Target:  5'- cGCGCUgagcgggucgGCGGCgCUgaaCCCCCa-GCUGGUg -3'
miRNA:   3'- -CGCGAa---------CGCCG-GA---GGGGGcgCGGCCG- -5'
27463 3' -65.4 NC_005869.1 + 7919 0.66 0.171708
Target:  5'- cGCGCUgcaggugGUGGCCguccagagCCCgCCugcaGCGCUGGa -3'
miRNA:   3'- -CGCGAa------CGCCGGa-------GGG-GG----CGCGGCCg -5'
27463 3' -65.4 NC_005869.1 + 16738 0.66 0.178126
Target:  5'- gGgGCacgGCGGCCgccgCCCgcuccagcgccgcggCCGCGCUGaGCu -3'
miRNA:   3'- -CgCGaa-CGCCGGa---GGG---------------GGCGCGGC-CG- -5'
27463 3' -65.4 NC_005869.1 + 27440 0.66 0.180941
Target:  5'- gGUGCgaG-GGCUccgCCCCCGgcuaauugcaUGCCGGCg -3'
miRNA:   3'- -CGCGaaCgCCGGa--GGGGGC----------GCGGCCG- -5'
27463 3' -65.4 NC_005869.1 + 15530 0.66 0.185237
Target:  5'- cGCGCgcgGCGgcgccgggcuaccGCCUCCaCCGCGUugaccacauCGGCc -3'
miRNA:   3'- -CGCGaa-CGC-------------CGGAGGgGGCGCG---------GCCG- -5'
27463 3' -65.4 NC_005869.1 + 12797 0.66 0.19061
Target:  5'- gGCGCccGUGGCCgUCgCCCCGUccuGCaucaGGUa -3'
miRNA:   3'- -CGCGaaCGCCGG-AG-GGGGCG---CGg---CCG- -5'
27463 3' -65.4 NC_005869.1 + 12738 0.66 0.192598
Target:  5'- aGCGCaggaUGCGcuCCUCCUCggcggucagggcauaCGcCGCCGGCa -3'
miRNA:   3'- -CGCGa---ACGCc-GGAGGGG---------------GC-GCGGCCG- -5'
27463 3' -65.4 NC_005869.1 + 9456 0.82 0.010122
Target:  5'- aGCGCUUcGUGGaCCggcugCCCuuGCGCCGGCg -3'
miRNA:   3'- -CGCGAA-CGCC-GGa----GGGggCGCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.