miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27463 3' -65.4 NC_005869.1 + 16013 0.67 0.162899
Target:  5'- gGCGCgUGCGcGCCcaCCUaCCGC-CCGGUg -3'
miRNA:   3'- -CGCGaACGC-CGGa-GGG-GGCGcGGCCG- -5'
27463 3' -65.4 NC_005869.1 + 11444 0.67 0.162899
Target:  5'- aGCGC--GUGGUCagcaCCUCGCGgCGGCg -3'
miRNA:   3'- -CGCGaaCGCCGGag--GGGGCGCgGCCG- -5'
27463 3' -65.4 NC_005869.1 + 5552 0.67 0.162899
Target:  5'- aUGCUUGCGGgCaCCgCgGCcCCGGCa -3'
miRNA:   3'- cGCGAACGCCgGaGGgGgCGcGGCCG- -5'
27463 3' -65.4 NC_005869.1 + 9790 0.67 0.162899
Target:  5'- cGCGCUgcaggcggaUGCGGUCggccaugCCCCagGCcuccuGCUGGCa -3'
miRNA:   3'- -CGCGA---------ACGCCGGa------GGGGg-CG-----CGGCCG- -5'
27463 3' -65.4 NC_005869.1 + 9828 0.67 0.160336
Target:  5'- aGCGCgc-CGGCCgcaaagaccucacccUCCUgCGCGCCauccGGCa -3'
miRNA:   3'- -CGCGaacGCCGG---------------AGGGgGCGCGG----CCG- -5'
27463 3' -65.4 NC_005869.1 + 15676 0.67 0.158648
Target:  5'- gGCGgcUGCGGCgCaCCCCCaggaugGCCGGCg -3'
miRNA:   3'- -CGCgaACGCCG-GaGGGGGcg----CGGCCG- -5'
27463 3' -65.4 NC_005869.1 + 24466 0.67 0.158648
Target:  5'- cGC-CUggaaGCGGCCcucuucUCCCCCGCcacGCCGccGCg -3'
miRNA:   3'- -CGcGAa---CGCCGG------AGGGGGCG---CGGC--CG- -5'
27463 3' -65.4 NC_005869.1 + 16688 0.67 0.154498
Target:  5'- gGCGCcacGaCGGCCUggggCCggCCCGC-CCGGCg -3'
miRNA:   3'- -CGCGaa-C-GCCGGA----GG--GGGCGcGGCCG- -5'
27463 3' -65.4 NC_005869.1 + 28003 0.67 0.154498
Target:  5'- aGUGaggauggUGCGGUCUCCaUCGCGgUGGCg -3'
miRNA:   3'- -CGCga-----ACGCCGGAGGgGGCGCgGCCG- -5'
27463 3' -65.4 NC_005869.1 + 15462 0.67 0.150446
Target:  5'- cGCGgUggagGCGGUagcccggcgCCgCCGCGCgCGGCg -3'
miRNA:   3'- -CGCgAa---CGCCGga-------GGgGGCGCG-GCCG- -5'
27463 3' -65.4 NC_005869.1 + 33744 0.67 0.146492
Target:  5'- aGCGgaUGUGGCCaCgCCUGCgGUCGGUu -3'
miRNA:   3'- -CGCgaACGCCGGaGgGGGCG-CGGCCG- -5'
27463 3' -65.4 NC_005869.1 + 15353 0.67 0.142632
Target:  5'- aCGCgaucGcCGGCg-CCaCCCGcCGCCGGCg -3'
miRNA:   3'- cGCGaa--C-GCCGgaGG-GGGC-GCGGCCG- -5'
27463 3' -65.4 NC_005869.1 + 4561 0.67 0.142632
Target:  5'- -aGCUgcacGCccGCUUCCCCCGCugcaCCGGCu -3'
miRNA:   3'- cgCGAa---CGc-CGGAGGGGGCGc---GGCCG- -5'
27463 3' -65.4 NC_005869.1 + 17575 0.68 0.138865
Target:  5'- cCGCa-GCGGCggUCCCCCGCcCuCGGCu -3'
miRNA:   3'- cGCGaaCGCCGg-AGGGGGCGcG-GCCG- -5'
27463 3' -65.4 NC_005869.1 + 17422 0.68 0.137753
Target:  5'- cGCGCgccccggugguuccgGUGGCCcggCgCCCGCGgCGGUu -3'
miRNA:   3'- -CGCGaa-------------CGCCGGa--GgGGGCGCgGCCG- -5'
27463 3' -65.4 NC_005869.1 + 10697 0.68 0.13519
Target:  5'- aGCGC--GUcGCCcCCUCCGCGCCcagGGCg -3'
miRNA:   3'- -CGCGaaCGcCGGaGGGGGCGCGG---CCG- -5'
27463 3' -65.4 NC_005869.1 + 10783 0.68 0.131605
Target:  5'- cCGCUcgGgGGCCgccgcgCCCgacagCCGCGCCaGGCc -3'
miRNA:   3'- cGCGAa-CgCCGGa-----GGG-----GGCGCGG-CCG- -5'
27463 3' -65.4 NC_005869.1 + 31503 0.68 0.131605
Target:  5'- aGCGCUUGCGGCa---CUgGCugaaGCUGGCg -3'
miRNA:   3'- -CGCGAACGCCGgaggGGgCG----CGGCCG- -5'
27463 3' -65.4 NC_005869.1 + 17495 0.68 0.131605
Target:  5'- cGCGCgccgcgUGC-GCCUcgcgCCCCCagaGCGCCucGGCg -3'
miRNA:   3'- -CGCGa-----ACGcCGGA----GGGGG---CGCGG--CCG- -5'
27463 3' -65.4 NC_005869.1 + 23793 0.68 0.128108
Target:  5'- -gGag-GgGGCCcgcCCCCCGCGcCCGGUg -3'
miRNA:   3'- cgCgaaCgCCGGa--GGGGGCGC-GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.