miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27463 5' -52.8 NC_005869.1 + 16502 0.66 0.742567
Target:  5'- cCGuGCAGGuccuggcccccaAGCGUCGUCUGCAGgaGGUg -3'
miRNA:   3'- -GC-UGUCC------------UCGCAGCAGGUGUUagUCG- -5'
27463 5' -52.8 NC_005869.1 + 26657 0.66 0.731579
Target:  5'- gCGcCAGGAGCGUCGgcgggCCGagggCGGa -3'
miRNA:   3'- -GCuGUCCUCGCAGCa----GGUguuaGUCg -5'
27463 5' -52.8 NC_005869.1 + 7239 0.66 0.730474
Target:  5'- aCGGCAucguaggGGcAGUGUCccuuGUCCACGGcCAGCu -3'
miRNA:   3'- -GCUGU-------CC-UCGCAG----CAGGUGUUaGUCG- -5'
27463 5' -52.8 NC_005869.1 + 15411 0.66 0.724932
Target:  5'- gCGGCGGGuggcgccggcgaucGCGUUGaCCAC-GUCGGCc -3'
miRNA:   3'- -GCUGUCCu-------------CGCAGCaGGUGuUAGUCG- -5'
27463 5' -52.8 NC_005869.1 + 12013 0.67 0.686665
Target:  5'- --cCAGcAGCG-CGUucaCCACGGUCAGCa -3'
miRNA:   3'- gcuGUCcUCGCaGCA---GGUGUUAGUCG- -5'
27463 5' -52.8 NC_005869.1 + 24231 0.67 0.675262
Target:  5'- gGACgAGGAGCagguGUCcUCCGCGucAUCGGUu -3'
miRNA:   3'- gCUG-UCCUCG----CAGcAGGUGU--UAGUCG- -5'
27463 5' -52.8 NC_005869.1 + 23260 0.67 0.662667
Target:  5'- aCGACGGGGccauGUGUUGcagCCACGacgugggGUCGGCc -3'
miRNA:   3'- -GCUGUCCU----CGCAGCa--GGUGU-------UAGUCG- -5'
27463 5' -52.8 NC_005869.1 + 27596 0.67 0.652334
Target:  5'- uCGGCAGcGAGCaauUUGUCCGCGAguUCGuGCc -3'
miRNA:   3'- -GCUGUC-CUCGc--AGCAGGUGUU--AGU-CG- -5'
27463 5' -52.8 NC_005869.1 + 6314 0.67 0.651184
Target:  5'- uGGCGaugcugcGGAGCGUuugguuucUGUCC-CGGUCGGCc -3'
miRNA:   3'- gCUGU-------CCUCGCA--------GCAGGuGUUAGUCG- -5'
27463 5' -52.8 NC_005869.1 + 5762 0.67 0.650035
Target:  5'- -cGCAGGGGCcgGUCGgcgaugggggugCCGCGgucGUCGGCg -3'
miRNA:   3'- gcUGUCCUCG--CAGCa-----------GGUGU---UAGUCG- -5'
27463 5' -52.8 NC_005869.1 + 16625 0.69 0.560697
Target:  5'- gGGCGGGccggccccaGGcCGUCGUggcgCCGCAGcUCAGCg -3'
miRNA:   3'- gCUGUCC---------UC-GCAGCA----GGUGUU-AGUCG- -5'
27463 5' -52.8 NC_005869.1 + 2113 0.78 0.153626
Target:  5'- aGGCGGGGGgGUCuUCCAUggUUAGCu -3'
miRNA:   3'- gCUGUCCUCgCAGcAGGUGuuAGUCG- -5'
27463 5' -52.8 NC_005869.1 + 23938 1.04 0.002597
Target:  5'- gCGACAGGAGCGUCG-CCACAAUCAGCa -3'
miRNA:   3'- -GCUGUCCUCGCAGCaGGUGUUAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.