miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27464 3' -64 NC_005869.1 + 18715 0.66 0.207892
Target:  5'- -cCCGCCGCCGCuCACCaCCa-CCACc -3'
miRNA:   3'- guGGUGGCGGCG-GUGGaGGcgGGUGc -5'
27464 3' -64 NC_005869.1 + 9342 0.66 0.213334
Target:  5'- -uCUGCUGCUGCUGCCUCCGCggggACGg -3'
miRNA:   3'- guGGUGGCGGCGGUGGAGGCGgg--UGC- -5'
27464 3' -64 NC_005869.1 + 27772 0.66 0.213334
Target:  5'- cCAgCACCGCCGCCAgugcCCUaaCCGCUg--- -3'
miRNA:   3'- -GUgGUGGCGGCGGU----GGA--GGCGGgugc -5'
27464 3' -64 NC_005869.1 + 16564 0.66 0.218897
Target:  5'- gCACC-CaCGCCGCC-CCUagcCCCGCGg -3'
miRNA:   3'- -GUGGuG-GCGGCGGuGGAggcGGGUGC- -5'
27464 3' -64 NC_005869.1 + 32184 0.67 0.192282
Target:  5'- aGCCcCUGCCGCacCugCUCCGCCaucauuCGCGc -3'
miRNA:   3'- gUGGuGGCGGCG--GugGAGGCGG------GUGC- -5'
27464 3' -64 NC_005869.1 + 26536 0.67 0.192282
Target:  5'- cCACCGCCGCgaggUGCCccCCUCCuUCCugGu -3'
miRNA:   3'- -GUGGUGGCG----GCGGu-GGAGGcGGGugC- -5'
27464 3' -64 NC_005869.1 + 10147 0.67 0.182455
Target:  5'- gGCCGCaagcgCGCgGCC-UCUCCGCCCGu- -3'
miRNA:   3'- gUGGUG-----GCGgCGGuGGAGGCGGGUgc -5'
27464 3' -64 NC_005869.1 + 28458 0.67 0.177709
Target:  5'- uGCgAgCGCUGCCGCagcgaCGCCCACa -3'
miRNA:   3'- gUGgUgGCGGCGGUGgag--GCGGGUGc -5'
27464 3' -64 NC_005869.1 + 15248 0.67 0.173074
Target:  5'- gGCCGgaGCCGCgGCCggaCGCCgACGc -3'
miRNA:   3'- gUGGUggCGGCGgUGGag-GCGGgUGC- -5'
27464 3' -64 NC_005869.1 + 306 0.67 0.197368
Target:  5'- gGCCAcauCCGCUGUggguauauCACCggcCCGCUCGCGg -3'
miRNA:   3'- gUGGU---GGCGGCG--------GUGGa--GGCGGGUGC- -5'
27464 3' -64 NC_005869.1 + 21393 0.67 0.187312
Target:  5'- aCGCCGCCGgCaGCCGCCgCUGCCgGu- -3'
miRNA:   3'- -GUGGUGGCgG-CGGUGGaGGCGGgUgc -5'
27464 3' -64 NC_005869.1 + 16153 0.67 0.192282
Target:  5'- gCACCAgCGCCggcaggauGCCACCccucaUCgGCCCcCGg -3'
miRNA:   3'- -GUGGUgGCGG--------CGGUGG-----AGgCGGGuGC- -5'
27464 3' -64 NC_005869.1 + 17416 0.67 0.170345
Target:  5'- cCACC-CCGCgCGCCccggugguuccggugGCCcggCGCCCGCGg -3'
miRNA:   3'- -GUGGuGGCG-GCGG---------------UGGag-GCGGGUGC- -5'
27464 3' -64 NC_005869.1 + 14782 0.67 0.192282
Target:  5'- aGCUACUGCCGCUGCgCUCCcggGCCUucuACa -3'
miRNA:   3'- gUGGUGGCGGCGGUG-GAGG---CGGG---UGc -5'
27464 3' -64 NC_005869.1 + 3867 0.67 0.187312
Target:  5'- aGCC-CaGCCGCCACCaCCaCCCACc -3'
miRNA:   3'- gUGGuGgCGGCGGUGGaGGcGGGUGc -5'
27464 3' -64 NC_005869.1 + 10670 0.67 0.177709
Target:  5'- uCGCCcUCGCCGUCGCUgacgCgGCCgCGCGa -3'
miRNA:   3'- -GUGGuGGCGGCGGUGGa---GgCGG-GUGC- -5'
27464 3' -64 NC_005869.1 + 29426 0.67 0.197368
Target:  5'- uCGCC-CgCGCCGCCGCCcgCgGaCCCAUc -3'
miRNA:   3'- -GUGGuG-GCGGCGGUGGa-GgC-GGGUGc -5'
27464 3' -64 NC_005869.1 + 26560 0.67 0.168547
Target:  5'- cCAuCCACCggaguaGCCaGCCagguaggacACCUCCGCCCuCGg -3'
miRNA:   3'- -GU-GGUGG------CGG-CGG---------UGGAGGCGGGuGC- -5'
27464 3' -64 NC_005869.1 + 27101 0.68 0.164126
Target:  5'- aGCCACaaucugggcgUGCCGCCgguGCCUCCGucgauuacuccaCCCGCa -3'
miRNA:   3'- gUGGUG----------GCGGCGG---UGGAGGC------------GGGUGc -5'
27464 3' -64 NC_005869.1 + 31415 0.68 0.164126
Target:  5'- cCGCCGCUG-CGCCccgaugGCCUCCGCCgccaGCu -3'
miRNA:   3'- -GUGGUGGCgGCGG------UGGAGGCGGg---UGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.