miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27464 5' -58.6 NC_005869.1 + 6111 0.67 0.280086
Target:  5'- -cCAUcGCGGUGGCGGCGGUcgcuguagcgcgugGGGAGg -3'
miRNA:   3'- aaGUGaCGUCGUCGCCGUCG--------------UCCUCg -5'
27464 5' -58.6 NC_005869.1 + 13283 0.67 0.274235
Target:  5'- -cCACUcGUAGguGUaGGUcgcccccGGCAGGAGCa -3'
miRNA:   3'- aaGUGA-CGUCguCG-CCG-------UCGUCCUCG- -5'
27464 5' -58.6 NC_005869.1 + 15458 0.67 0.270628
Target:  5'- gUCGgaGCGGaugaugaucuccugGGCGGCGGCGGGcGCu -3'
miRNA:   3'- aAGUgaCGUCg-------------UCGCCGUCGUCCuCG- -5'
27464 5' -58.6 NC_005869.1 + 1625 0.67 0.26777
Target:  5'- --aGCUgGCAGCGGUGaaGguGCGGGAGg -3'
miRNA:   3'- aagUGA-CGUCGUCGC--CguCGUCCUCg -5'
27464 5' -58.6 NC_005869.1 + 33042 0.68 0.260732
Target:  5'- -gUugUGuUGGCGGgaauaGGCAGCAGGGGUa -3'
miRNA:   3'- aaGugAC-GUCGUCg----CCGUCGUCCUCG- -5'
27464 5' -58.6 NC_005869.1 + 4498 0.68 0.260732
Target:  5'- -cCGgUGCAGCGGgGGaAGCGGGcguGCa -3'
miRNA:   3'- aaGUgACGUCGUCgCCgUCGUCCu--CG- -5'
27464 5' -58.6 NC_005869.1 + 15584 0.68 0.253845
Target:  5'- -gCACc-CGGCGGCGGC-GCAGGcGCu -3'
miRNA:   3'- aaGUGacGUCGUCGCCGuCGUCCuCG- -5'
27464 5' -58.6 NC_005869.1 + 6520 0.68 0.253845
Target:  5'- gUC-CaGCAGaGGCGGCcgcccuuGCGGGAGCa -3'
miRNA:   3'- aAGuGaCGUCgUCGCCGu------CGUCCUCG- -5'
27464 5' -58.6 NC_005869.1 + 9552 0.68 0.247108
Target:  5'- -gCGCcGCGGCGGC-GUGGCGGGGGa -3'
miRNA:   3'- aaGUGaCGUCGUCGcCGUCGUCCUCg -5'
27464 5' -58.6 NC_005869.1 + 5584 0.69 0.215624
Target:  5'- gUCGCUGCGGCAGCGcucGCAcuGGGucucGCa -3'
miRNA:   3'- aAGUGACGUCGUCGC---CGUcgUCCu---CG- -5'
27464 5' -58.6 NC_005869.1 + 9953 0.69 0.215031
Target:  5'- gUgGCgGCGGUGGUGGCGGCGgaaggguGGGGCc -3'
miRNA:   3'- aAgUGaCGUCGUCGCCGUCGU-------CCUCG- -5'
27464 5' -58.6 NC_005869.1 + 10153 0.69 0.209755
Target:  5'- aUCGUUGCAGaGGC-GCAGCAGGuGCu -3'
miRNA:   3'- aAGUGACGUCgUCGcCGUCGUCCuCG- -5'
27464 5' -58.6 NC_005869.1 + 8408 0.69 0.209755
Target:  5'- -gCGCUGUcccAGUGGCGGUGGUAGGugauGCu -3'
miRNA:   3'- aaGUGACG---UCGUCGCCGUCGUCCu---CG- -5'
27464 5' -58.6 NC_005869.1 + 7611 0.69 0.204024
Target:  5'- -cCGCgcagGCGGCGGCGccGCAGCuGG-GCa -3'
miRNA:   3'- aaGUGa---CGUCGUCGC--CGUCGuCCuCG- -5'
27464 5' -58.6 NC_005869.1 + 5428 0.69 0.204024
Target:  5'- -cCACauagGUgaggGGCGGUGGCAGCGgcGGGGCg -3'
miRNA:   3'- aaGUGa---CG----UCGUCGCCGUCGU--CCUCG- -5'
27464 5' -58.6 NC_005869.1 + 16660 0.69 0.198429
Target:  5'- cUCAgcGCGGCcGCGGC-GCuGGAGCg -3'
miRNA:   3'- aAGUgaCGUCGuCGCCGuCGuCCUCG- -5'
27464 5' -58.6 NC_005869.1 + 26476 0.69 0.192969
Target:  5'- -aCACcaaCAGCAGCaGCAGCAaGAGCa -3'
miRNA:   3'- aaGUGac-GUCGUCGcCGUCGUcCUCG- -5'
27464 5' -58.6 NC_005869.1 + 12642 0.69 0.192969
Target:  5'- --aACcgGCAGCGGCGGCuGCcGGcGGCg -3'
miRNA:   3'- aagUGa-CGUCGUCGCCGuCGuCC-UCG- -5'
27464 5' -58.6 NC_005869.1 + 17059 0.7 0.18764
Target:  5'- -gCcCUGCggGGCAcGCGGC-GCGGGGGCu -3'
miRNA:   3'- aaGuGACG--UCGU-CGCCGuCGUCCUCG- -5'
27464 5' -58.6 NC_005869.1 + 10354 0.7 0.172426
Target:  5'- -cCGCUGCuGCAGCuGGaugcuCAGGAGCa -3'
miRNA:   3'- aaGUGACGuCGUCG-CCguc--GUCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.