Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27465 | 3' | -57.1 | NC_005869.1 | + | 12631 | 0.66 | 0.506172 |
Target: 5'- uCUUCCUGaccaaccGG-CAGCGGCGgcugccGGCGGCg -3' miRNA: 3'- -GGAGGACca-----CCaGUCGCUGC------UCGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 15282 | 0.68 | 0.387266 |
Target: 5'- gCCgcgggggCCgGGgcgGGggCGGCGGCG-GCAGCg -3' miRNA: 3'- -GGa------GGaCCa--CCa-GUCGCUGCuCGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 15327 | 0.7 | 0.266844 |
Target: 5'- ----gUGGUGGUgagCGGCGGCGGGgGGCg -3' miRNA: 3'- ggaggACCACCA---GUCGCUGCUCgUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 15474 | 0.75 | 0.138945 |
Target: 5'- aUCUCCUGGg---CGGCGGCGGGCgcuuGGCg -3' miRNA: 3'- -GGAGGACCaccaGUCGCUGCUCG----UCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 17248 | 0.68 | 0.369296 |
Target: 5'- aCCUCCguggcGGUGGgCGGCaugauggaGACGgggaggcugGGCAGCa -3' miRNA: 3'- -GGAGGa----CCACCaGUCG--------CUGC---------UCGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 17338 | 0.69 | 0.335103 |
Target: 5'- uCCUCCguguccGGUGG-CAGgGGCacGGCGGCc -3' miRNA: 3'- -GGAGGa-----CCACCaGUCgCUGc-UCGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 17812 | 0.68 | 0.400183 |
Target: 5'- aCUCCgcGGUGGguuccgcguggcgccUCGGCGcaGCG-GCGGCa -3' miRNA: 3'- gGAGGa-CCACC---------------AGUCGC--UGCuCGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 17834 | 0.68 | 0.37821 |
Target: 5'- uCCggCCgcgGGacgcgggGGUCGGCGAgGGGCGGg -3' miRNA: 3'- -GGa-GGa--CCa------CCAGUCGCUgCUCGUCg -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 18228 | 0.68 | 0.37821 |
Target: 5'- --gCCUGGaacagcgGGaCGGUGACGAGCGuGCg -3' miRNA: 3'- ggaGGACCa------CCaGUCGCUGCUCGU-CG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 18656 | 0.71 | 0.227887 |
Target: 5'- cCCUCCgacgucgacgaUGGcGGcgcCGGCGGCGGGUGGCg -3' miRNA: 3'- -GGAGG-----------ACCaCCa--GUCGCUGCUCGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 18779 | 0.67 | 0.405803 |
Target: 5'- gCUCCU-GUGcGUCGGCGucCGGccGCGGCu -3' miRNA: 3'- gGAGGAcCAC-CAGUCGCu-GCU--CGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 19640 | 0.68 | 0.387266 |
Target: 5'- cCCUCCUGGUaGGggUAGCGcuuGCGGaugccCAGCa -3' miRNA: 3'- -GGAGGACCA-CCa-GUCGC---UGCUc----GUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 20700 | 0.69 | 0.334279 |
Target: 5'- uCCUCCUccagggaggagcgGGaGGcgCGGCGGCG-GCGGCc -3' miRNA: 3'- -GGAGGA-------------CCaCCa-GUCGCUGCuCGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 21371 | 0.7 | 0.303283 |
Target: 5'- uCCUCCUcGGcGGUCAGgGcauACGccgccGGCAGCc -3' miRNA: 3'- -GGAGGA-CCaCCAGUCgC---UGC-----UCGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 22350 | 0.78 | 0.085341 |
Target: 5'- --aCCUGGUGGagGGCGuggacaACGAGCGGCu -3' miRNA: 3'- ggaGGACCACCagUCGC------UGCUCGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 23355 | 0.68 | 0.37821 |
Target: 5'- cCCUCCUcgcgcGGccGcGUCAGCGACG-GCgagGGCg -3' miRNA: 3'- -GGAGGA-----CCa-C-CAGUCGCUGCuCG---UCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 24967 | 1.13 | 0.00018 |
Target: 5'- aCCUCCUGGUGGUCAGCGACGAGCAGCu -3' miRNA: 3'- -GGAGGACCACCAGUCGCUGCUCGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 26127 | 0.7 | 0.2957 |
Target: 5'- cCUUCCUGcUGGUCuuccaccucucgGGgGACGAGgAGCu -3' miRNA: 3'- -GGAGGACcACCAG------------UCgCUGCUCgUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 26767 | 0.69 | 0.351905 |
Target: 5'- aUCUCCaGGaaGGccgcagCAGCGGCG-GCAGCa -3' miRNA: 3'- -GGAGGaCCa-CCa-----GUCGCUGCuCGUCG- -5' |
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27465 | 3' | -57.1 | NC_005869.1 | + | 30163 | 0.66 | 0.506172 |
Target: 5'- cUCUCCggggugGGUGGUggUGGCGGCuGGGCuuccacuccAGCa -3' miRNA: 3'- -GGAGGa-----CCACCA--GUCGCUG-CUCG---------UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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