miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27467 3' -49 NC_005869.1 + 12487 0.66 0.867503
Target:  5'- cCUACaUUGGGCAccUGCUGacacucuacCGCGAGAc-- -3'
miRNA:   3'- -GAUG-AACCCGU--ACGAC---------GUGCUUUugu -5'
27467 3' -49 NC_005869.1 + 7756 0.67 0.849319
Target:  5'- cCUGCa-GGGCGUGCcGCAgggccuUGAAGGCGc -3'
miRNA:   3'- -GAUGaaCCCGUACGaCGU------GCUUUUGU- -5'
27467 3' -49 NC_005869.1 + 23556 0.67 0.809749
Target:  5'- -gGCUUGGGCcccGC-GC-CGGAAGCAc -3'
miRNA:   3'- gaUGAACCCGua-CGaCGuGCUUUUGU- -5'
27467 3' -49 NC_005869.1 + 1226 0.67 0.809749
Target:  5'- uUGCUaUGGGCGUGuCUGCGguCuGAAGCAc -3'
miRNA:   3'- gAUGA-ACCCGUAC-GACGU--GcUUUUGU- -5'
27467 3' -49 NC_005869.1 + 5225 0.68 0.777667
Target:  5'- -gGgUUGGGguUGCUGCGUGAGuACGg -3'
miRNA:   3'- gaUgAACCCguACGACGUGCUUuUGU- -5'
27467 3' -49 NC_005869.1 + 24534 0.7 0.685227
Target:  5'- uCUGCagcGGCAccgcGCUGCGCGggGGCGc -3'
miRNA:   3'- -GAUGaacCCGUa---CGACGUGCuuUUGU- -5'
27467 3' -49 NC_005869.1 + 22930 0.71 0.624958
Target:  5'- -----cGGGgGUGCUGCAgGAAGGCc -3'
miRNA:   3'- gaugaaCCCgUACGACGUgCUUUUGu -5'
27467 3' -49 NC_005869.1 + 17061 0.72 0.529492
Target:  5'- cCUGCg-GGGCAcGCgGCGCGggGGCu -3'
miRNA:   3'- -GAUGaaCCCGUaCGaCGUGCuuUUGu -5'
27467 3' -49 NC_005869.1 + 4374 0.74 0.418839
Target:  5'- -gACcUGGGCggGCUGCAUGAGggggGACAu -3'
miRNA:   3'- gaUGaACCCGuaCGACGUGCUU----UUGU- -5'
27467 3' -49 NC_005869.1 + 16954 0.77 0.282133
Target:  5'- -gACUUGGGC-UGCccgcGCACGGAGGCGa -3'
miRNA:   3'- gaUGAACCCGuACGa---CGUGCUUUUGU- -5'
27467 3' -49 NC_005869.1 + 25216 1.1 0.001722
Target:  5'- cCUACUUGGGCAUGCUGCACGAAAACAg -3'
miRNA:   3'- -GAUGAACCCGUACGACGUGCUUUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.