Results 1 - 11 of 11 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27467 | 3' | -49 | NC_005869.1 | + | 16954 | 0.77 | 0.282133 |
Target: 5'- -gACUUGGGC-UGCccgcGCACGGAGGCGa -3' miRNA: 3'- gaUGAACCCGuACGa---CGUGCUUUUGU- -5' |
|||||||
27467 | 3' | -49 | NC_005869.1 | + | 17061 | 0.72 | 0.529492 |
Target: 5'- cCUGCg-GGGCAcGCgGCGCGggGGCu -3' miRNA: 3'- -GAUGaaCCCGUaCGaCGUGCuuUUGu -5' |
|||||||
27467 | 3' | -49 | NC_005869.1 | + | 22930 | 0.71 | 0.624958 |
Target: 5'- -----cGGGgGUGCUGCAgGAAGGCc -3' miRNA: 3'- gaugaaCCCgUACGACGUgCUUUUGu -5' |
|||||||
27467 | 3' | -49 | NC_005869.1 | + | 24534 | 0.7 | 0.685227 |
Target: 5'- uCUGCagcGGCAccgcGCUGCGCGggGGCGc -3' miRNA: 3'- -GAUGaacCCGUa---CGACGUGCuuUUGU- -5' |
|||||||
27467 | 3' | -49 | NC_005869.1 | + | 1226 | 0.67 | 0.809749 |
Target: 5'- uUGCUaUGGGCGUGuCUGCGguCuGAAGCAc -3' miRNA: 3'- gAUGA-ACCCGUAC-GACGU--GcUUUUGU- -5' |
|||||||
27467 | 3' | -49 | NC_005869.1 | + | 12487 | 0.66 | 0.867503 |
Target: 5'- cCUACaUUGGGCAccUGCUGacacucuacCGCGAGAc-- -3' miRNA: 3'- -GAUG-AACCCGU--ACGAC---------GUGCUUUugu -5' |
|||||||
27467 | 3' | -49 | NC_005869.1 | + | 7756 | 0.67 | 0.849319 |
Target: 5'- cCUGCa-GGGCGUGCcGCAgggccuUGAAGGCGc -3' miRNA: 3'- -GAUGaaCCCGUACGaCGU------GCUUUUGU- -5' |
|||||||
27467 | 3' | -49 | NC_005869.1 | + | 23556 | 0.67 | 0.809749 |
Target: 5'- -gGCUUGGGCcccGC-GC-CGGAAGCAc -3' miRNA: 3'- gaUGAACCCGua-CGaCGuGCUUUUGU- -5' |
|||||||
27467 | 3' | -49 | NC_005869.1 | + | 5225 | 0.68 | 0.777667 |
Target: 5'- -gGgUUGGGguUGCUGCGUGAGuACGg -3' miRNA: 3'- gaUgAACCCguACGACGUGCUUuUGU- -5' |
|||||||
27467 | 3' | -49 | NC_005869.1 | + | 4374 | 0.74 | 0.418839 |
Target: 5'- -gACcUGGGCggGCUGCAUGAGggggGACAu -3' miRNA: 3'- gaUGaACCCGuaCGACGUGCUU----UUGU- -5' |
|||||||
27467 | 3' | -49 | NC_005869.1 | + | 25216 | 1.1 | 0.001722 |
Target: 5'- cCUACUUGGGCAUGCUGCACGAAAACAg -3' miRNA: 3'- -GAUGAACCCGUACGACGUGCUUUUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home