miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27468 5' -54.8 NC_005869.1 + 11442 0.66 0.627786
Target:  5'- -gGAGCgCGUGGucAGcACCUcgcgGCGGCGCg -3'
miRNA:   3'- ggUUCGaGCAUC--UC-UGGGa---CGUCGCG- -5'
27468 5' -54.8 NC_005869.1 + 8200 0.66 0.61637
Target:  5'- gUCGGGCUUG-GGGGGCCgCUGgAGCu- -3'
miRNA:   3'- -GGUUCGAGCaUCUCUGG-GACgUCGcg -5'
27468 5' -54.8 NC_005869.1 + 26350 0.66 0.61637
Target:  5'- ---uGCUCGaagaAGAGGCUCUcaGCAGCGa -3'
miRNA:   3'- gguuCGAGCa---UCUCUGGGA--CGUCGCg -5'
27468 5' -54.8 NC_005869.1 + 1152 0.66 0.60497
Target:  5'- uCgGAGUggGUGGAGAuUCCUGCGGgaGCu -3'
miRNA:   3'- -GgUUCGagCAUCUCU-GGGACGUCg-CG- -5'
27468 5' -54.8 NC_005869.1 + 8291 0.66 0.593595
Target:  5'- aCCAccuGgaCGaAGguGGGCCCgGCGGCGCg -3'
miRNA:   3'- -GGUu--CgaGCaUC--UCUGGGaCGUCGCG- -5'
27468 5' -54.8 NC_005869.1 + 16995 0.66 0.582255
Target:  5'- gCCGGGCUcCGUgagcacgggcAGGGAuaCCgUGCGGgGCu -3'
miRNA:   3'- -GGUUCGA-GCA----------UCUCU--GGgACGUCgCG- -5'
27468 5' -54.8 NC_005869.1 + 9561 0.66 0.582255
Target:  5'- gUCAAcucuCUCGUAGGuACCUccugcuguUGCAGCGCu -3'
miRNA:   3'- -GGUUc---GAGCAUCUcUGGG--------ACGUCGCG- -5'
27468 5' -54.8 NC_005869.1 + 18398 0.66 0.582255
Target:  5'- aCGAGgUgCGUuugcGGAGGCggcggCUGCGGCGCa -3'
miRNA:   3'- gGUUCgA-GCA----UCUCUGg----GACGUCGCG- -5'
27468 5' -54.8 NC_005869.1 + 11118 0.67 0.548539
Target:  5'- cCCcAGCUgGUGGaAGACCCcaagauucugGCcAGCGUg -3'
miRNA:   3'- -GGuUCGAgCAUC-UCUGGGa---------CG-UCGCG- -5'
27468 5' -54.8 NC_005869.1 + 26182 0.67 0.53743
Target:  5'- gCAGGUgguggcCGUccAGAG-CCCgccUGCAGCGCu -3'
miRNA:   3'- gGUUCGa-----GCA--UCUCuGGG---ACGUCGCG- -5'
27468 5' -54.8 NC_005869.1 + 3886 0.67 0.526401
Target:  5'- cCCAccC-CGgagAGcGACCCUGCGGUGCc -3'
miRNA:   3'- -GGUucGaGCa--UCuCUGGGACGUCGCG- -5'
27468 5' -54.8 NC_005869.1 + 8811 0.67 0.515457
Target:  5'- cUCGAGCUCGUccucguccAGGucCCCgugGCcGGCGCg -3'
miRNA:   3'- -GGUUCGAGCA--------UCUcuGGGa--CG-UCGCG- -5'
27468 5' -54.8 NC_005869.1 + 23055 0.68 0.504607
Target:  5'- aCCGucuGCUCGUAGgccuGGGCCaggcugGCcGCGCu -3'
miRNA:   3'- -GGUu--CGAGCAUC----UCUGGga----CGuCGCG- -5'
27468 5' -54.8 NC_005869.1 + 11593 0.68 0.462262
Target:  5'- -gGAGUUCGguccccGGGGACC--GCGGCGCg -3'
miRNA:   3'- ggUUCGAGCa-----UCUCUGGgaCGUCGCG- -5'
27468 5' -54.8 NC_005869.1 + 24030 0.69 0.438776
Target:  5'- aCCAccGGUUCcUGGAccugGAugacuucucagacuCCCUGCAGCGCa -3'
miRNA:   3'- -GGU--UCGAGcAUCU----CU--------------GGGACGUCGCG- -5'
27468 5' -54.8 NC_005869.1 + 28422 0.69 0.438776
Target:  5'- cCCcAGCUCaccuggcuggucgaGUGcGAGACCCagUGCgAGCGCu -3'
miRNA:   3'- -GGuUCGAG--------------CAU-CUCUGGG--ACG-UCGCG- -5'
27468 5' -54.8 NC_005869.1 + 3367 0.69 0.431764
Target:  5'- aCCAGGCUgGacuGAG-UCCUGCGGCuGUg -3'
miRNA:   3'- -GGUUCGAgCau-CUCuGGGACGUCG-CG- -5'
27468 5' -54.8 NC_005869.1 + 19239 0.69 0.431764
Target:  5'- cCUggGUgUUGUAGaAGGCCCgGgAGCGCa -3'
miRNA:   3'- -GGuuCG-AGCAUC-UCUGGGaCgUCGCG- -5'
27468 5' -54.8 NC_005869.1 + 4090 0.69 0.431764
Target:  5'- aCCAGGCUgGacuGAG-UCCUGCGGCuGUg -3'
miRNA:   3'- -GGUUCGAgCau-CUCuGGGACGUCG-CG- -5'
27468 5' -54.8 NC_005869.1 + 19643 0.69 0.421862
Target:  5'- uCCAAGCUCGUGGucAGACaauauaccuUCUGCgacuAGCGg -3'
miRNA:   3'- -GGUUCGAGCAUC--UCUG---------GGACG----UCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.