miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27469 5' -63.2 NC_005869.1 + 18045 0.71 0.10643
Target:  5'- cGCCgCCCC--GUCCaGCGGCGCCUgggGCg -3'
miRNA:   3'- -CGG-GGGGuuCGGGcUGCCGUGGGa--CG- -5'
27469 5' -63.2 NC_005869.1 + 31971 0.69 0.132627
Target:  5'- cGCuCCCCCGGG-CCGGCGGCgaucuaaaccagAUCCgGCc -3'
miRNA:   3'- -CG-GGGGGUUCgGGCUGCCG------------UGGGaCG- -5'
27469 5' -63.2 NC_005869.1 + 23405 0.69 0.150676
Target:  5'- cGCCCCCUccGCgcccagggcgccggCCGGCGGCuucaUCUGCc -3'
miRNA:   3'- -CGGGGGGuuCG--------------GGCUGCCGug--GGACG- -5'
27469 5' -63.2 NC_005869.1 + 26275 0.77 0.036249
Target:  5'- cGCCUUCaAGGCCCuGCGGCacGCCCUGCa -3'
miRNA:   3'- -CGGGGGgUUCGGGcUGCCG--UGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 26030 0.71 0.109418
Target:  5'- cGCCCCaUCGGcuccCCCGAgGGCACCCgccGCc -3'
miRNA:   3'- -CGGGG-GGUUc---GGGCUgCCGUGGGa--CG- -5'
27469 5' -63.2 NC_005869.1 + 28506 0.68 0.160299
Target:  5'- -gCCCCCAAGCUCua---CGCCCUGCg -3'
miRNA:   3'- cgGGGGGUUCGGGcugccGUGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 28272 0.74 0.057321
Target:  5'- gGCaCCCCCAucgCCGAcCGGC-CCCUGCg -3'
miRNA:   3'- -CG-GGGGGUucgGGCU-GCCGuGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 17131 0.68 0.164654
Target:  5'- gGCgCCUCCAGGaCUgGAacCGGCACCC-GCu -3'
miRNA:   3'- -CG-GGGGGUUC-GGgCU--GCCGUGGGaCG- -5'
27469 5' -63.2 NC_005869.1 + 25810 0.72 0.078269
Target:  5'- aCCCCCC--GCCCGAgGGCccgccGCCCcGCc -3'
miRNA:   3'- cGGGGGGuuCGGGCUgCCG-----UGGGaCG- -5'
27469 5' -63.2 NC_005869.1 + 10312 0.83 0.011833
Target:  5'- cGCCCCCCGcgcccggugaccccgAGCCCGGCGGUggcccgGCCgCUGCu -3'
miRNA:   3'- -CGGGGGGU---------------UCGGGCUGCCG------UGG-GACG- -5'
27469 5' -63.2 NC_005869.1 + 25466 0.68 0.164654
Target:  5'- cGCUgCCCGAGCUCaAC-GCGCCCgUGCc -3'
miRNA:   3'- -CGGgGGGUUCGGGcUGcCGUGGG-ACG- -5'
27469 5' -63.2 NC_005869.1 + 18654 0.69 0.143903
Target:  5'- gGCCCUCCGAcGUCgacgaUGGCGGCGCCg-GCg -3'
miRNA:   3'- -CGGGGGGUU-CGG-----GCUGCCGUGGgaCG- -5'
27469 5' -63.2 NC_005869.1 + 14994 0.69 0.147853
Target:  5'- uUCCCCguGGCgCGAUGGCACagagaUGCa -3'
miRNA:   3'- cGGGGGguUCGgGCUGCCGUGgg---ACG- -5'
27469 5' -63.2 NC_005869.1 + 25480 0.68 0.169115
Target:  5'- uCCCCaCCAAGCUCGuagagACCCUGCa -3'
miRNA:   3'- cGGGG-GGUUCGGGCugccgUGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 8501 0.66 0.230978
Target:  5'- aGCCCCCgCGugccggccuccgcGGCCuCGGCGGCGgCg-GCc -3'
miRNA:   3'- -CGGGGG-GU-------------UCGG-GCUGCCGUgGgaCG- -5'
27469 5' -63.2 NC_005869.1 + 13086 0.66 0.236966
Target:  5'- gGCCCUCCAccccGGCCCucucGCgcgucccgucccgGGCAuccuCCCUGCu -3'
miRNA:   3'- -CGGGGGGU----UCGGGc---UG-------------CCGU----GGGACG- -5'
27469 5' -63.2 NC_005869.1 + 17585 0.7 0.11563
Target:  5'- gGUCCCCC--GCCCu-CGGCugCCgagGCg -3'
miRNA:   3'- -CGGGGGGuuCGGGcuGCCGugGGa--CG- -5'
27469 5' -63.2 NC_005869.1 + 21208 0.66 0.237572
Target:  5'- uCCUCCguGGCCUGGCcgGGCAaugaccgCCUGCu -3'
miRNA:   3'- cGGGGGguUCGGGCUG--CCGUg------GGACG- -5'
27469 5' -63.2 NC_005869.1 + 16793 0.66 0.237572
Target:  5'- uGCCgCCCAccGCCaCGGaGGUgGCCCUGCc -3'
miRNA:   3'- -CGGgGGGUu-CGG-GCUgCCG-UGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 24408 0.68 0.160299
Target:  5'- cGCCCCCgGcgcAGCCgCGGaggccgccgaGGCGCCCUcggugGCg -3'
miRNA:   3'- -CGGGGGgU---UCGG-GCUg---------CCGUGGGA-----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.