Results 41 - 60 of 60 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27469 | 5' | -63.2 | NC_005869.1 | + | 17410 | 0.73 | 0.075455 |
Target: 5'- uGCCCCCCAccccgcgcGcCCCGGugguuccgguggccCGGCGCCCgcgGCg -3' miRNA: 3'- -CGGGGGGUu-------C-GGGCU--------------GCCGUGGGa--CG- -5' |
|||||||
27469 | 5' | -63.2 | NC_005869.1 | + | 9472 | 0.73 | 0.067774 |
Target: 5'- cGCCCuCCCGgggccgcAGCUCGAaGGCGCCCccGCg -3' miRNA: 3'- -CGGG-GGGU-------UCGGGCUgCCGUGGGa-CG- -5' |
|||||||
27469 | 5' | -63.2 | NC_005869.1 | + | 17479 | 0.74 | 0.060677 |
Target: 5'- aGCCCCUCcAGCCCcGCGcGCGCCgCgUGCg -3' miRNA: 3'- -CGGGGGGuUCGGGcUGC-CGUGG-G-ACG- -5' |
|||||||
27469 | 5' | -63.2 | NC_005869.1 | + | 18308 | 0.75 | 0.049701 |
Target: 5'- uGCCUCCgGGGUCC-ACGGUGCCCUGg -3' miRNA: 3'- -CGGGGGgUUCGGGcUGCCGUGGGACg -5' |
|||||||
27469 | 5' | -63.2 | NC_005869.1 | + | 15986 | 0.68 | 0.160299 |
Target: 5'- cGCgCCCCAGGCgCCGcuggacgggGCGGCG-CgUGCg -3' miRNA: 3'- -CGgGGGGUUCG-GGC---------UGCCGUgGgACG- -5' |
|||||||
27469 | 5' | -63.2 | NC_005869.1 | + | 24408 | 0.68 | 0.160299 |
Target: 5'- cGCCCCCgGcgcAGCCgCGGaggccgccgaGGCGCCCUcggugGCg -3' miRNA: 3'- -CGGGGGgU---UCGG-GCUg---------CCGUGGGA-----CG- -5' |
|||||||
27469 | 5' | -63.2 | NC_005869.1 | + | 25480 | 0.68 | 0.169115 |
Target: 5'- uCCCCaCCAAGCUCGuagagACCCUGCa -3' miRNA: 3'- cGGGG-GGUUCGGGCugccgUGGGACG- -5' |
|||||||
27469 | 5' | -63.2 | NC_005869.1 | + | 16793 | 0.66 | 0.237572 |
Target: 5'- uGCCgCCCAccGCCaCGGaGGUgGCCCUGCc -3' miRNA: 3'- -CGGgGGGUu-CGG-GCUgCCG-UGGGACG- -5' |
|||||||
27469 | 5' | -63.2 | NC_005869.1 | + | 21208 | 0.66 | 0.237572 |
Target: 5'- uCCUCCguGGCCUGGCcgGGCAaugaccgCCUGCu -3' miRNA: 3'- cGGGGGguUCGGGCUG--CCGUg------GGACG- -5' |
|||||||
27469 | 5' | -63.2 | NC_005869.1 | + | 13086 | 0.66 | 0.236966 |
Target: 5'- gGCCCUCCAccccGGCCCucucGCgcgucccgucccgGGCAuccuCCCUGCu -3' miRNA: 3'- -CGGGGGGU----UCGGGc---UG-------------CCGU----GGGACG- -5' |
|||||||
27469 | 5' | -63.2 | NC_005869.1 | + | 5489 | 0.66 | 0.225699 |
Target: 5'- aGCUUgCCGGGgCCG-CGGUGCCC-GCa -3' miRNA: 3'- -CGGGgGGUUCgGGCuGCCGUGGGaCG- -5' |
|||||||
27469 | 5' | -63.2 | NC_005869.1 | + | 16861 | 0.67 | 0.216567 |
Target: 5'- aGCUCCCUGAccCCCGGCcuccgcgcgcugaugGGCACCgaGCg -3' miRNA: 3'- -CGGGGGGUUc-GGGCUG---------------CCGUGGgaCG- -5' |
|||||||
27469 | 5' | -63.2 | NC_005869.1 | + | 8501 | 0.66 | 0.230978 |
Target: 5'- aGCCCCCgCGugccggccuccgcGGCCuCGGCGGCGgCg-GCc -3' miRNA: 3'- -CGGGGG-GU-------------UCGG-GCUGCCGUgGgaCG- -5' |
|||||||
27469 | 5' | -63.2 | NC_005869.1 | + | 24488 | 0.67 | 0.213779 |
Target: 5'- cCCCCgCCAcGCCgCcGCGGCGCCaggagaacggaacCUGCg -3' miRNA: 3'- cGGGG-GGUuCGG-GcUGCCGUGG-------------GACG- -5' |
|||||||
27469 | 5' | -63.2 | NC_005869.1 | + | 27478 | 0.67 | 0.208837 |
Target: 5'- aGCaCUCUCcGGCCgGACGGCAUCUUccaGCu -3' miRNA: 3'- -CG-GGGGGuUCGGgCUGCCGUGGGA---CG- -5' |
|||||||
27469 | 5' | -63.2 | NC_005869.1 | + | 17865 | 0.67 | 0.208294 |
Target: 5'- aCCgCCgGGGgCCGAugaggggUGGCAUCCUGCc -3' miRNA: 3'- cGGgGGgUUCgGGCU-------GCCGUGGGACG- -5' |
|||||||
27469 | 5' | -63.2 | NC_005869.1 | + | 16630 | 0.67 | 0.203463 |
Target: 5'- gGCCggCCCCAGGCCguCG-UGGCGCCgCaGCu -3' miRNA: 3'- -CGG--GGGGUUCGG--GCuGCCGUGG-GaCG- -5' |
|||||||
27469 | 5' | -63.2 | NC_005869.1 | + | 29202 | 0.67 | 0.19769 |
Target: 5'- aGUCCCCCAucacCCUGACcgccgagGGCAucuCCCUGUc -3' miRNA: 3'- -CGGGGGGUuc--GGGCUG-------CCGU---GGGACG- -5' |
|||||||
27469 | 5' | -63.2 | NC_005869.1 | + | 17013 | 0.68 | 0.178362 |
Target: 5'- aUCCCggCCAGGCagccCCGcACGGUAuCCCUGCc -3' miRNA: 3'- cGGGG--GGUUCG----GGC-UGCCGU-GGGACG- -5' |
|||||||
27469 | 5' | -63.2 | NC_005869.1 | + | 25846 | 1.11 | 0.000065 |
Target: 5'- gGCCCCCCAAGCCCGACGGCACCCUGCc -3' miRNA: 3'- -CGGGGGGUUCGGGCUGCCGUGGGACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home