miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27469 5' -63.2 NC_005869.1 + 25526 0.67 0.203463
Target:  5'- cGCCgCCgAGGCCgCGGaggcCGGCACgcgggggcuCCUGCu -3'
miRNA:   3'- -CGGgGGgUUCGG-GCU----GCCGUG---------GGACG- -5'
27469 5' -63.2 NC_005869.1 + 29202 0.67 0.19769
Target:  5'- aGUCCCCCAucacCCUGACcgccgagGGCAucuCCCUGUc -3'
miRNA:   3'- -CGGGGGGUuc--GGGCUG-------CCGU---GGGACG- -5'
27469 5' -63.2 NC_005869.1 + 20284 0.67 0.188055
Target:  5'- cGCCCCUCGguggGGCCCa--GGUACCgCgGCg -3'
miRNA:   3'- -CGGGGGGU----UCGGGcugCCGUGG-GaCG- -5'
27469 5' -63.2 NC_005869.1 + 26409 0.68 0.178362
Target:  5'- aCCCCCUGGccuauGCCCagcuGCGGCGCcgccgCCUGCg -3'
miRNA:   3'- cGGGGGGUU-----CGGGc---UGCCGUG-----GGACG- -5'
27469 5' -63.2 NC_005869.1 + 17013 0.68 0.178362
Target:  5'- aUCCCggCCAGGCagccCCGcACGGUAuCCCUGCc -3'
miRNA:   3'- cGGGG--GGUUCG----GGC-UGCCGU-GGGACG- -5'
27469 5' -63.2 NC_005869.1 + 25480 0.68 0.169115
Target:  5'- uCCCCaCCAAGCUCGuagagACCCUGCa -3'
miRNA:   3'- cGGGG-GGUUCGGGCugccgUGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 25466 0.68 0.164654
Target:  5'- cGCUgCCCGAGCUCaAC-GCGCCCgUGCc -3'
miRNA:   3'- -CGGgGGGUUCGGGcUGcCGUGGG-ACG- -5'
27469 5' -63.2 NC_005869.1 + 17131 0.68 0.164654
Target:  5'- gGCgCCUCCAGGaCUgGAacCGGCACCC-GCu -3'
miRNA:   3'- -CG-GGGGGUUC-GGgCU--GCCGUGGGaCG- -5'
27469 5' -63.2 NC_005869.1 + 27348 0.68 0.164654
Target:  5'- aCCCCUCAAcCCCuucGACcGCGCCCUGg -3'
miRNA:   3'- cGGGGGGUUcGGG---CUGcCGUGGGACg -5'
27469 5' -63.2 NC_005869.1 + 24408 0.68 0.160299
Target:  5'- cGCCCCCgGcgcAGCCgCGGaggccgccgaGGCGCCCUcggugGCg -3'
miRNA:   3'- -CGGGGGgU---UCGG-GCUg---------CCGUGGGA-----CG- -5'
27469 5' -63.2 NC_005869.1 + 28506 0.68 0.160299
Target:  5'- -gCCCCCAAGCUCua---CGCCCUGCg -3'
miRNA:   3'- cgGGGGGUUCGGGcugccGUGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 15986 0.68 0.160299
Target:  5'- cGCgCCCCAGGCgCCGcuggacgggGCGGCG-CgUGCg -3'
miRNA:   3'- -CGgGGGGUUCG-GGC---------UGCCGUgGgACG- -5'
27469 5' -63.2 NC_005869.1 + 23405 0.69 0.150676
Target:  5'- cGCCCCCUccGCgcccagggcgccggCCGGCGGCuucaUCUGCc -3'
miRNA:   3'- -CGGGGGGuuCG--------------GGCUGCCGug--GGACG- -5'
27469 5' -63.2 NC_005869.1 + 14994 0.69 0.147853
Target:  5'- uUCCCCguGGCgCGAUGGCACagagaUGCa -3'
miRNA:   3'- cGGGGGguUCGgGCUGCCGUGgg---ACG- -5'
27469 5' -63.2 NC_005869.1 + 18654 0.69 0.143903
Target:  5'- gGCCCUCCGAcGUCgacgaUGGCGGCGCCg-GCg -3'
miRNA:   3'- -CGGGGGGUU-CGG-----GCUGCCGUGGgaCG- -5'
27469 5' -63.2 NC_005869.1 + 16571 0.69 0.14005
Target:  5'- cGCCgCCCCuAGCCCcGCGGCGguCCagccgGCg -3'
miRNA:   3'- -CGG-GGGGuUCGGGcUGCCGU--GGga---CG- -5'
27469 5' -63.2 NC_005869.1 + 28617 0.69 0.14005
Target:  5'- cGCCCCUCA--CCUauGugGG-ACCCUGCg -3'
miRNA:   3'- -CGGGGGGUucGGG--CugCCgUGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 23380 0.69 0.137784
Target:  5'- aGCCCCuCCGAGCCgCuGCGGUgcugccagaucacgcACCC-GCa -3'
miRNA:   3'- -CGGGG-GGUUCGG-GcUGCCG---------------UGGGaCG- -5'
27469 5' -63.2 NC_005869.1 + 25563 0.69 0.132627
Target:  5'- -gUCCUCGAGCgCucCGGCAUCCUGCc -3'
miRNA:   3'- cgGGGGGUUCGgGcuGCCGUGGGACG- -5'
27469 5' -63.2 NC_005869.1 + 31971 0.69 0.132627
Target:  5'- cGCuCCCCCGGG-CCGGCGGCgaucuaaaccagAUCCgGCc -3'
miRNA:   3'- -CG-GGGGGUUCgGGCUGCCG------------UGGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.