miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27470 3' -54.6 NC_005869.1 + 21372 0.66 0.576858
Target:  5'- cCUCCUcggcggucagggcauACGCCGcCGGCAGCcGCcGCu -3'
miRNA:   3'- -GAGGA---------------UGUGGUuGUCGUCGuCGuCGu -5'
27470 3' -54.6 NC_005869.1 + 20701 0.69 0.403671
Target:  5'- cCUCCUccagggaggagcgggAgGCgCGGCGGCGGCGGcCGGCGg -3'
miRNA:   3'- -GAGGA---------------UgUG-GUUGUCGUCGUC-GUCGU- -5'
27470 3' -54.6 NC_005869.1 + 19252 0.68 0.43993
Target:  5'- ----aGCGCUcGCAGCGGCuGCAGCu -3'
miRNA:   3'- gaggaUGUGGuUGUCGUCGuCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 19059 0.68 0.450327
Target:  5'- --gCUGCACCccggggauGCuguuacGCAGCGGCAGCGu -3'
miRNA:   3'- gagGAUGUGGu-------UGu-----CGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 18657 0.66 0.549242
Target:  5'- cCUCCgACGUCGACgauGGCGGCgccGGCGGCGg -3'
miRNA:   3'- -GAGGaUGUGGUUG---UCGUCG---UCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 18403 0.78 0.08752
Target:  5'- gCUCCUcCGCCAGCAGCAGCAaCAGa- -3'
miRNA:   3'- -GAGGAuGUGGUUGUCGUCGUcGUCgu -5'
27470 3' -54.6 NC_005869.1 + 18352 0.79 0.085938
Target:  5'- uCUCCcACGCCGuggaccgccggugcaACAGCAGCAGCuGCGg -3'
miRNA:   3'- -GAGGaUGUGGU---------------UGUCGUCGUCGuCGU- -5'
27470 3' -54.6 NC_005869.1 + 18205 0.72 0.23025
Target:  5'- cCUCggGCGCCAACGcCuGCAGCAGCu -3'
miRNA:   3'- -GAGgaUGUGGUUGUcGuCGUCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 17825 0.75 0.14555
Target:  5'- uUCCgcgugGCGCCucggcGCAGCGGCGGCAGgCGg -3'
miRNA:   3'- gAGGa----UGUGGu----UGUCGUCGUCGUC-GU- -5'
27470 3' -54.6 NC_005869.1 + 17541 0.68 0.450327
Target:  5'- -gCCgUACcCCggUGGCGGUGGCAGCGc -3'
miRNA:   3'- gaGG-AUGuGGuuGUCGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 17378 0.67 0.470446
Target:  5'- gCUCCaGCGCC-GCGGCcgcgcugAGCuGCGGCGc -3'
miRNA:   3'- -GAGGaUGUGGuUGUCG-------UCGuCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 16173 0.67 0.460858
Target:  5'- ----aGC-CCGGCGGCAGCGGCGGg- -3'
miRNA:   3'- gaggaUGuGGUUGUCGUCGUCGUCgu -5'
27470 3' -54.6 NC_005869.1 + 15291 0.72 0.23025
Target:  5'- -gCCgggGCGggGGCGGCGGCGGCAGCGg -3'
miRNA:   3'- gaGGa--UGUggUUGUCGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 14500 0.66 0.560705
Target:  5'- aCUCCaGCACCAucaAGCcccugaAGCAGgaCAGCAa -3'
miRNA:   3'- -GAGGaUGUGGUug-UCG------UCGUC--GUCGU- -5'
27470 3' -54.6 NC_005869.1 + 14185 0.69 0.390089
Target:  5'- --aCUAC-CUGGCGGUggGGCGGCAGCAg -3'
miRNA:   3'- gagGAUGuGGUUGUCG--UCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 13285 0.66 0.537854
Target:  5'- aCUCgUAgguguagguCGCCccCGGCAGgAGCAGCAg -3'
miRNA:   3'- -GAGgAU---------GUGGuuGUCGUCgUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 12633 0.8 0.072881
Target:  5'- uUCCUGaccaACCGGCAGCGGCGGCuGCc -3'
miRNA:   3'- gAGGAUg---UGGUUGUCGUCGUCGuCGu -5'
27470 3' -54.6 NC_005869.1 + 11717 0.66 0.537854
Target:  5'- gCUCUgaaGCUggGGCGGCGGCGGCGGgGg -3'
miRNA:   3'- -GAGGaugUGG--UUGUCGUCGUCGUCgU- -5'
27470 3' -54.6 NC_005869.1 + 11684 0.69 0.352969
Target:  5'- -cCCUuuuuaACAaCAACAGCAGCauGGCGGCGa -3'
miRNA:   3'- gaGGA-----UGUgGUUGUCGUCG--UCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 10742 0.68 0.43993
Target:  5'- -cCCgagcgGCACCcACGGguGCAGCucaAGCGa -3'
miRNA:   3'- gaGGa----UGUGGuUGUCguCGUCG---UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.