miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27470 3' -54.6 NC_005869.1 + 17378 0.67 0.470446
Target:  5'- gCUCCaGCGCC-GCGGCcgcgcugAGCuGCGGCGc -3'
miRNA:   3'- -GAGGaUGUGGuUGUCG-------UCGuCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 1933 0.73 0.223916
Target:  5'- -gCUggugGCG-CAGCGGCAGCAGUAGCAg -3'
miRNA:   3'- gaGGa---UGUgGUUGUCGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 9545 0.71 0.264209
Target:  5'- uCUCCUgGCGCC-GCGGCGGC-GUGGCGg -3'
miRNA:   3'- -GAGGA-UGUGGuUGUCGUCGuCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 5689 0.67 0.486648
Target:  5'- --gCUGCacgaugagggcggugGCCAGCAcGUAGCGGCGGUAg -3'
miRNA:   3'- gagGAUG---------------UGGUUGU-CGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 21597 0.79 0.077007
Target:  5'- cCUCCgcgaagggagcCACCAGgAGCAGCAGCAGCc -3'
miRNA:   3'- -GAGGau---------GUGGUUgUCGUCGUCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 1832 0.67 0.48992
Target:  5'- aCUCCUGaugACCGcagacgagcaugauGgAGCAGCGGCAGgAg -3'
miRNA:   3'- -GAGGAUg--UGGU--------------UgUCGUCGUCGUCgU- -5'
27470 3' -54.6 NC_005869.1 + 9605 0.67 0.493202
Target:  5'- gCUCCgcCACCGAgGGCGccuCGGCGGCc -3'
miRNA:   3'- -GAGGauGUGGUUgUCGUc--GUCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 18352 0.79 0.085938
Target:  5'- uCUCCcACGCCGuggaccgccggugcaACAGCAGCAGCuGCGg -3'
miRNA:   3'- -GAGGaUGUGGU---------------UGUCGUCGUCGuCGU- -5'
27470 3' -54.6 NC_005869.1 + 11717 0.66 0.537854
Target:  5'- gCUCUgaaGCUggGGCGGCGGCGGCGGgGg -3'
miRNA:   3'- -GAGGaugUGG--UUGUCGUCGUCGUCgU- -5'
27470 3' -54.6 NC_005869.1 + 9580 0.67 0.482301
Target:  5'- cCUCCUGCugUuGCAGC-GCuuCGGCAa -3'
miRNA:   3'- -GAGGAUGugGuUGUCGuCGucGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 11684 0.69 0.352969
Target:  5'- -cCCUuuuuaACAaCAACAGCAGCauGGCGGCGa -3'
miRNA:   3'- gaGGA-----UGUgGUUGUCGUCG--UCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 27578 0.71 0.30212
Target:  5'- uUCCccGCAgCGGCGGCAuCGGCAGCGa -3'
miRNA:   3'- gAGGa-UGUgGUUGUCGUcGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 7684 0.71 0.275903
Target:  5'- gCUCCUGCGCCAGCucggcgaGGUcuggguugugggccAGCAGguGCu -3'
miRNA:   3'- -GAGGAUGUGGUUG-------UCG--------------UCGUCguCGu -5'
27470 3' -54.6 NC_005869.1 + 23034 0.71 0.264209
Target:  5'- gUCgcACACCAGCGGCaucAGCAGguGCGu -3'
miRNA:   3'- gAGgaUGUGGUUGUCG---UCGUCguCGU- -5'
27470 3' -54.6 NC_005869.1 + 26178 0.79 0.07988
Target:  5'- aUCCgcagcaGCACCAGCAcCAGCAGCAGCc -3'
miRNA:   3'- gAGGa-----UGUGGUUGUcGUCGUCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 17541 0.68 0.450327
Target:  5'- -gCCgUACcCCggUGGCGGUGGCAGCGc -3'
miRNA:   3'- gaGG-AUGuGGuuGUCGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 16173 0.67 0.460858
Target:  5'- ----aGC-CCGGCGGCAGCGGCGGg- -3'
miRNA:   3'- gaggaUGuGGUUGUCGUCGUCGUCgu -5'
27470 3' -54.6 NC_005869.1 + 33563 0.67 0.460858
Target:  5'- gUCa-GCACC-GCGGcCAGCAGCAGUc -3'
miRNA:   3'- gAGgaUGUGGuUGUC-GUCGUCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 2921 0.67 0.471518
Target:  5'- cCUCCgcaGCACCAuguuuguggGCGGCcGCcugGGCAGCu -3'
miRNA:   3'- -GAGGa--UGUGGU---------UGUCGuCG---UCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 6782 0.67 0.471518
Target:  5'- gCUCCcGCaggagGCCGAUgaaguuggGGUAGCAGCGGCc -3'
miRNA:   3'- -GAGGaUG-----UGGUUG--------UCGUCGUCGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.