miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27470 3' -54.6 NC_005869.1 + 3530 0.74 0.183629
Target:  5'- aCUCCcGCuucguUCAGCAGCAaCAGCAGCAg -3'
miRNA:   3'- -GAGGaUGu----GGUUGUCGUcGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 17825 0.75 0.14555
Target:  5'- uUCCgcgugGCGCCucggcGCAGCGGCGGCAGgCGg -3'
miRNA:   3'- gAGGa----UGUGGu----UGUCGUCGUCGUC-GU- -5'
27470 3' -54.6 NC_005869.1 + 18352 0.79 0.085938
Target:  5'- uCUCCcACGCCGuggaccgccggugcaACAGCAGCAGCuGCGg -3'
miRNA:   3'- -GAGGaUGUGGU---------------UGUCGUCGUCGuCGU- -5'
27470 3' -54.6 NC_005869.1 + 26178 0.79 0.07988
Target:  5'- aUCCgcagcaGCACCAGCAcCAGCAGCAGCc -3'
miRNA:   3'- gAGGa-----UGUGGUUGUcGUCGUCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 26768 0.8 0.072881
Target:  5'- uCUCCaggaAgGCCGcaGCAGCGGCGGCAGCAg -3'
miRNA:   3'- -GAGGa---UgUGGU--UGUCGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 12633 0.8 0.072881
Target:  5'- uUCCUGaccaACCGGCAGCGGCGGCuGCc -3'
miRNA:   3'- gAGGAUg---UGGUUGUCGUCGUCGuCGu -5'
27470 3' -54.6 NC_005869.1 + 3657 0.69 0.380573
Target:  5'- --gCUGCGgCAGCAGCuGCAGgAGCu -3'
miRNA:   3'- gagGAUGUgGUUGUCGuCGUCgUCGu -5'
27470 3' -54.6 NC_005869.1 + 14185 0.69 0.390089
Target:  5'- --aCUAC-CUGGCGGUggGGCGGCAGCAg -3'
miRNA:   3'- gagGAUGuGGUUGUCG--UCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 7609 0.66 0.537854
Target:  5'- -gCCcGCGCaGGCGGCGGCGccGCAGCu -3'
miRNA:   3'- gaGGaUGUGgUUGUCGUCGU--CGUCGu -5'
27470 3' -54.6 NC_005869.1 + 11717 0.66 0.537854
Target:  5'- gCUCUgaaGCUggGGCGGCGGCGGCGGgGg -3'
miRNA:   3'- -GAGGaugUGG--UUGUCGUCGUCGUCgU- -5'
27470 3' -54.6 NC_005869.1 + 9580 0.67 0.482301
Target:  5'- cCUCCUGCugUuGCAGC-GCuuCGGCAa -3'
miRNA:   3'- -GAGGAUGugGuUGUCGuCGucGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 6782 0.67 0.471518
Target:  5'- gCUCCcGCaggagGCCGAUgaaguuggGGUAGCAGCGGCc -3'
miRNA:   3'- -GAGGaUG-----UGGUUG--------UCGUCGUCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 2921 0.67 0.471518
Target:  5'- cCUCCgcaGCACCAuguuuguggGCGGCcGCcugGGCAGCu -3'
miRNA:   3'- -GAGGa--UGUGGU---------UGUCGuCG---UCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 33563 0.67 0.460858
Target:  5'- gUCa-GCACC-GCGGcCAGCAGCAGUc -3'
miRNA:   3'- gAGgaUGUGGuUGUC-GUCGUCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 16173 0.67 0.460858
Target:  5'- ----aGC-CCGGCGGCAGCGGCGGg- -3'
miRNA:   3'- gaggaUGuGGUUGUCGUCGUCGUCgu -5'
27470 3' -54.6 NC_005869.1 + 10742 0.68 0.43993
Target:  5'- -cCCgagcgGCACCcACGGguGCAGCucaAGCGa -3'
miRNA:   3'- gaGGa----UGUGGuUGUCguCGUCG---UCGU- -5'
27470 3' -54.6 NC_005869.1 + 23879 0.68 0.43993
Target:  5'- gCUCCUGCACgGGCGGagaGGCcGCGcGCu -3'
miRNA:   3'- -GAGGAUGUGgUUGUCg--UCGuCGU-CGu -5'
27470 3' -54.6 NC_005869.1 + 19252 0.68 0.43993
Target:  5'- ----aGCGCUcGCAGCGGCuGCAGCu -3'
miRNA:   3'- gaggaUGUGGuUGUCGUCGuCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 26998 0.68 0.419554
Target:  5'- --aCUGCGCU--CGGCAGCGGCAGa- -3'
miRNA:   3'- gagGAUGUGGuuGUCGUCGUCGUCgu -5'
27470 3' -54.6 NC_005869.1 + 22981 0.69 0.39976
Target:  5'- aUCUUGCAggucugccggcCCAGCAGgGGCaccuGGCGGCAg -3'
miRNA:   3'- gAGGAUGU-----------GGUUGUCgUCG----UCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.