miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27470 3' -54.6 NC_005869.1 + 16173 0.67 0.460858
Target:  5'- ----aGC-CCGGCGGCAGCGGCGGg- -3'
miRNA:   3'- gaggaUGuGGUUGUCGUCGUCGUCgu -5'
27470 3' -54.6 NC_005869.1 + 26087 0.67 0.459799
Target:  5'- -aCCUACACCuggcACGGCcGCuucggaaAGCAGCu -3'
miRNA:   3'- gaGGAUGUGGu---UGUCGuCG-------UCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 17541 0.68 0.450327
Target:  5'- -gCCgUACcCCggUGGCGGUGGCAGCGc -3'
miRNA:   3'- gaGG-AUGuGGuuGUCGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 19059 0.68 0.450327
Target:  5'- --gCUGCACCccggggauGCuguuacGCAGCGGCAGCGu -3'
miRNA:   3'- gagGAUGUGGu-------UGu-----CGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 10742 0.68 0.43993
Target:  5'- -cCCgagcgGCACCcACGGguGCAGCucaAGCGa -3'
miRNA:   3'- gaGGa----UGUGGuUGUCguCGUCG---UCGU- -5'
27470 3' -54.6 NC_005869.1 + 19252 0.68 0.43993
Target:  5'- ----aGCGCUcGCAGCGGCuGCAGCu -3'
miRNA:   3'- gaggaUGUGGuUGUCGUCGuCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 9905 0.68 0.43993
Target:  5'- gCUCCUGCuGCCGcuGCuGCAGUgaaGGUGGCGg -3'
miRNA:   3'- -GAGGAUG-UGGU--UGuCGUCG---UCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 23879 0.68 0.43993
Target:  5'- gCUCCUGCACgGGCGGagaGGCcGCGcGCu -3'
miRNA:   3'- -GAGGAUGUGgUUGUCg--UCGuCGU-CGu -5'
27470 3' -54.6 NC_005869.1 + 5425 0.68 0.429671
Target:  5'- gUCCcACAUaggugaggGGCGGUGGCAGCGGCGg -3'
miRNA:   3'- gAGGaUGUGg-------UUGUCGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 26998 0.68 0.419554
Target:  5'- --aCUGCGCU--CGGCAGCGGCAGa- -3'
miRNA:   3'- gagGAUGUGGuuGUCGUCGUCGUCgu -5'
27470 3' -54.6 NC_005869.1 + 10636 0.68 0.409582
Target:  5'- -cCCUGCGggugcgugauCUGGCAGCAccGCAGCGGCu -3'
miRNA:   3'- gaGGAUGU----------GGUUGUCGU--CGUCGUCGu -5'
27470 3' -54.6 NC_005869.1 + 20701 0.69 0.403671
Target:  5'- cCUCCUccagggaggagcgggAgGCgCGGCGGCGGCGGcCGGCGg -3'
miRNA:   3'- -GAGGA---------------UgUG-GUUGUCGUCGUC-GUCGU- -5'
27470 3' -54.6 NC_005869.1 + 22981 0.69 0.39976
Target:  5'- aUCUUGCAggucugccggcCCAGCAGgGGCaccuGGCGGCAg -3'
miRNA:   3'- gAGGAUGU-----------GGUUGUCgUCG----UCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 7404 0.69 0.39976
Target:  5'- aCUCCaGgGCCGAgaggaugucgUGGCGGUAGCGGCGc -3'
miRNA:   3'- -GAGGaUgUGGUU----------GUCGUCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 24292 0.69 0.390089
Target:  5'- cCUCCUgcGCGCCAucCGGCAGCucaAGaCGGCc -3'
miRNA:   3'- -GAGGA--UGUGGUu-GUCGUCG---UC-GUCGu -5'
27470 3' -54.6 NC_005869.1 + 14185 0.69 0.390089
Target:  5'- --aCUAC-CUGGCGGUggGGCGGCAGCAg -3'
miRNA:   3'- gagGAUGuGGUUGUCG--UCGUCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 3657 0.69 0.380573
Target:  5'- --gCUGCGgCAGCAGCuGCAGgAGCu -3'
miRNA:   3'- gagGAUGUgGUUGUCGuCGUCgUCGu -5'
27470 3' -54.6 NC_005869.1 + 6666 0.69 0.362011
Target:  5'- gUCCU--GCCAGCGGCGgGCGGCcagGGCGc -3'
miRNA:   3'- gAGGAugUGGUUGUCGU-CGUCG---UCGU- -5'
27470 3' -54.6 NC_005869.1 + 11684 0.69 0.352969
Target:  5'- -cCCUuuuuaACAaCAACAGCAGCauGGCGGCGa -3'
miRNA:   3'- gaGGA-----UGUgGUUGUCGUCG--UCGUCGU- -5'
27470 3' -54.6 NC_005869.1 + 8289 0.7 0.335369
Target:  5'- ---gUGCGCagagguuGCAGCGGCAGUAGCAc -3'
miRNA:   3'- gaggAUGUGgu-----UGUCGUCGUCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.