miRNA display CGI


Results 61 - 79 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27471 3' -61.1 NC_005869.1 + 21627 0.66 0.258566
Target:  5'- gCAGCcggguguugGGCGuCAGCAGGgaggacACguGCCCGCg -3'
miRNA:   3'- -GUCG---------CCGCcGUCGUCU------UGguCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 22761 0.68 0.182653
Target:  5'- gGGCGGCccacaucuguuuGGUcagcuGCAGGGCCAGCaUCACa -3'
miRNA:   3'- gUCGCCG------------CCGu----CGUCUUGGUCG-GGUG- -5'
27471 3' -61.1 NC_005869.1 + 23003 0.7 0.138368
Target:  5'- gCAGgGGCaccuGGCGGCAGccCCAGCCgCAg -3'
miRNA:   3'- -GUCgCCG----CCGUCGUCuuGGUCGG-GUg -5'
27471 3' -61.1 NC_005869.1 + 23042 0.68 0.192898
Target:  5'- cCAGCGGCauCAGCAGGugCGucuccgcguuGCCCAUc -3'
miRNA:   3'- -GUCGCCGccGUCGUCUugGU----------CGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 23693 0.66 0.258566
Target:  5'- cCAGCuGCaGCAGCG--GCCGGgCCACc -3'
miRNA:   3'- -GUCGcCGcCGUCGUcuUGGUCgGGUG- -5'
27471 3' -61.1 NC_005869.1 + 24138 0.78 0.032161
Target:  5'- gCAGCaGCGGCAGCAGG---AGCCCACc -3'
miRNA:   3'- -GUCGcCGCCGUCGUCUuggUCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 24437 0.66 0.245396
Target:  5'- aGGCGcccuCGGUGGCGGAGCuCAGCcgCCGCc -3'
miRNA:   3'- gUCGCc---GCCGUCGUCUUG-GUCG--GGUG- -5'
27471 3' -61.1 NC_005869.1 + 24768 0.73 0.073573
Target:  5'- aGGCGGCGGUGGcCGGAcCCAGCaCGCc -3'
miRNA:   3'- gUCGCCGCCGUC-GUCUuGGUCGgGUG- -5'
27471 3' -61.1 NC_005869.1 + 24821 0.67 0.220728
Target:  5'- uGGCGGUGGUcaAGCAGugcaucGCCGucaCCCACu -3'
miRNA:   3'- gUCGCCGCCG--UCGUCu-----UGGUc--GGGUG- -5'
27471 3' -61.1 NC_005869.1 + 26184 0.71 0.120123
Target:  5'- aGGUGGUGGCcgucCAGAGCCcGCCUGCa -3'
miRNA:   3'- gUCGCCGCCGuc--GUCUUGGuCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 26363 0.66 0.279396
Target:  5'- gAGCuGGCGcaGgAGCGGGGCCccGGCCUGCc -3'
miRNA:   3'- gUCG-CCGC--CgUCGUCUUGG--UCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 26482 0.66 0.279396
Target:  5'- aCAGCaGCaGCAGCaAGAGCauCAGCCaGCg -3'
miRNA:   3'- -GUCGcCGcCGUCG-UCUUG--GUCGGgUG- -5'
27471 3' -61.1 NC_005869.1 + 26785 1.09 0.000109
Target:  5'- gCAGCGGCGGCAGCAGAACCAGCCCACg -3'
miRNA:   3'- -GUCGCCGCCGUCGUCUUGGUCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 27584 0.73 0.085093
Target:  5'- gCAGCGGCGGCaucGGCAgcGAGCaauuuGUCCGCg -3'
miRNA:   3'- -GUCGCCGCCG---UCGU--CUUGgu---CGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 27745 0.73 0.07575
Target:  5'- uCAGCaGCGGCuGCGGGagcuccucgACCAGCaCCGCc -3'
miRNA:   3'- -GUCGcCGCCGuCGUCU---------UGGUCG-GGUG- -5'
27471 3' -61.1 NC_005869.1 + 30177 0.68 0.177714
Target:  5'- uGGUGGUGGCGGCuGGGCU--UCCACu -3'
miRNA:   3'- gUCGCCGCCGUCGuCUUGGucGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 31084 0.67 0.214901
Target:  5'- gCAGCGGCuGgGGCuGAAgCuGCCCAg -3'
miRNA:   3'- -GUCGCCGcCgUCGuCUUgGuCGGGUg -5'
27471 3' -61.1 NC_005869.1 + 31980 0.66 0.258566
Target:  5'- gGGcCGGCGGCGaucuaaacCAGAuCCGGCCCu- -3'
miRNA:   3'- gUC-GCCGCCGUc-------GUCUuGGUCGGGug -5'
27471 3' -61.1 NC_005869.1 + 32233 0.67 0.217216
Target:  5'- aUAGUGGCGGCAcCAGAagACuuaaaauacccucguCAGUCCACc -3'
miRNA:   3'- -GUCGCCGCCGUcGUCU--UG---------------GUCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.