miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27471 3' -61.1 NC_005869.1 + 8268 0.66 0.245396
Target:  5'- uGGUGGCgaGGCAGC-GGugCGGUgCGCa -3'
miRNA:   3'- gUCGCCG--CCGUCGuCUugGUCGgGUG- -5'
27471 3' -61.1 NC_005869.1 + 6276 0.67 0.239022
Target:  5'- uGGCGGCGGUgcuGGUcgaGGAGCU--CCCGCa -3'
miRNA:   3'- gUCGCCGCCG---UCG---UCUUGGucGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 15335 0.67 0.232171
Target:  5'- gAGCGGCGGCGGgGGGcgcAUCuuauuguGGgCCACg -3'
miRNA:   3'- gUCGCCGCCGUCgUCU---UGG-------UCgGGUG- -5'
27471 3' -61.1 NC_005869.1 + 16681 0.67 0.22669
Target:  5'- gAGCgGGCGGCGGCc--GCCGuGCCCc- -3'
miRNA:   3'- gUCG-CCGCCGUCGucuUGGU-CGGGug -5'
27471 3' -61.1 NC_005869.1 + 19459 0.67 0.224887
Target:  5'- cCAGCuGCGGUAGUAGGugaaggugucccccGCCucgggguccucGCCCACg -3'
miRNA:   3'- -GUCGcCGCCGUCGUCU--------------UGGu----------CGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 7619 0.67 0.220728
Target:  5'- gCGGCGGCGccGCAGCuGGGCauaGGCCa-- -3'
miRNA:   3'- -GUCGCCGC--CGUCGuCUUGg--UCGGgug -5'
27471 3' -61.1 NC_005869.1 + 24821 0.67 0.220728
Target:  5'- uGGCGGUGGUcaAGCAGugcaucGCCGucaCCCACu -3'
miRNA:   3'- gUCGCCGCCG--UCGUCu-----UGGUc--GGGUG- -5'
27471 3' -61.1 NC_005869.1 + 32233 0.67 0.217216
Target:  5'- aUAGUGGCGGCAcCAGAagACuuaaaauacccucguCAGUCCACc -3'
miRNA:   3'- -GUCGCCGCCGUcGUCU--UG---------------GUCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 31084 0.67 0.214901
Target:  5'- gCAGCGGCuGgGGCuGAAgCuGCCCAg -3'
miRNA:   3'- -GUCGCCGcCgUCGuCUUgGuCGGGUg -5'
27471 3' -61.1 NC_005869.1 + 10935 0.68 0.203641
Target:  5'- aGGCGGgGGgAgugagcGCGGcGCgGGCCCACa -3'
miRNA:   3'- gUCGCCgCCgU------CGUCuUGgUCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 15463 0.68 0.192898
Target:  5'- gCGGUGGaGGCGGUAGc-CCGGCgCCGCc -3'
miRNA:   3'- -GUCGCCgCCGUCGUCuuGGUCG-GGUG- -5'
27471 3' -61.1 NC_005869.1 + 7353 0.68 0.192898
Target:  5'- -uGUGGUGGUagAGUAGGuACCGGCgCACg -3'
miRNA:   3'- guCGCCGCCG--UCGUCU-UGGUCGgGUG- -5'
27471 3' -61.1 NC_005869.1 + 9386 0.68 0.192898
Target:  5'- aCGGCGcCGGCgcaagGGCA--GCCGGUCCACg -3'
miRNA:   3'- -GUCGCcGCCG-----UCGUcuUGGUCGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 23042 0.68 0.192898
Target:  5'- cCAGCGGCauCAGCAGGugCGucuccgcguuGCCCAUc -3'
miRNA:   3'- -GUCGCCGccGUCGUCUugGU----------CGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 22761 0.68 0.182653
Target:  5'- gGGCGGCccacaucuguuuGGUcagcuGCAGGGCCAGCaUCACa -3'
miRNA:   3'- gUCGCCG------------CCGu----CGUCUUGGUCG-GGUG- -5'
27471 3' -61.1 NC_005869.1 + 30177 0.68 0.177714
Target:  5'- uGGUGGUGGCGGCuGGGCU--UCCACu -3'
miRNA:   3'- gUCGCCGCCGUCGuCUUGGucGGGUG- -5'
27471 3' -61.1 NC_005869.1 + 18558 0.68 0.177714
Target:  5'- aCGGCGccGCGcGCGGCGGcGCCGGgCUACc -3'
miRNA:   3'- -GUCGC--CGC-CGUCGUCuUGGUCgGGUG- -5'
27471 3' -61.1 NC_005869.1 + 7425 0.69 0.16819
Target:  5'- -cGUGGCGGUAGCGGcGCCAggagcGUCgGCg -3'
miRNA:   3'- guCGCCGCCGUCGUCuUGGU-----CGGgUG- -5'
27471 3' -61.1 NC_005869.1 + 18385 0.69 0.154761
Target:  5'- gCAGCuGCGGCAGCAGcagcuccuccGCCAGCagcaGCa -3'
miRNA:   3'- -GUCGcCGCCGUCGUCu---------UGGUCGgg--UG- -5'
27471 3' -61.1 NC_005869.1 + 8227 0.69 0.150505
Target:  5'- gGGCGGCgGGCccucgGGCGGGGggucCCAGCgCACg -3'
miRNA:   3'- gUCGCCG-CCG-----UCGUCUU----GGUCGgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.