miRNA display CGI


Results 21 - 36 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27472 3' -53.3 NC_005869.1 + 969 0.68 0.587356
Target:  5'- aGGUGUCC--CUCAcUGGGGACgUACCc -3'
miRNA:   3'- -CCGUAGGucGAGUuGCUCCUGgAUGG- -5'
27472 3' -53.3 NC_005869.1 + 23366 0.68 0.575966
Target:  5'- cGGCcgcgUCAGCgaCGGCGAGGGCg-ACCg -3'
miRNA:   3'- -CCGua--GGUCGa-GUUGCUCCUGgaUGG- -5'
27472 3' -53.3 NC_005869.1 + 32360 0.69 0.542136
Target:  5'- aGGCAUgCAGaaaCUCuuccguuCGAGGACCgcCCa -3'
miRNA:   3'- -CCGUAgGUC---GAGuu-----GCUCCUGGauGG- -5'
27472 3' -53.3 NC_005869.1 + 5262 0.69 0.531
Target:  5'- gGGCGUCgAGCggGugGAGGGuCCgguCCu -3'
miRNA:   3'- -CCGUAGgUCGagUugCUCCU-GGau-GG- -5'
27472 3' -53.3 NC_005869.1 + 21660 0.69 0.531
Target:  5'- cGUGcCCGcGCUCcccAGCGGGGGCCUGCa -3'
miRNA:   3'- cCGUaGGU-CGAG---UUGCUCCUGGAUGg -5'
27472 3' -53.3 NC_005869.1 + 14420 0.69 0.519949
Target:  5'- gGGC-UUCAuGCUgAccuACGAGGACCUGgCg -3'
miRNA:   3'- -CCGuAGGU-CGAgU---UGCUCCUGGAUgG- -5'
27472 3' -53.3 NC_005869.1 + 28665 0.69 0.508989
Target:  5'- aGCA-CCAGCcgccUCAGCcucaaGAGGACCcugGCCa -3'
miRNA:   3'- cCGUaGGUCG----AGUUG-----CUCCUGGa--UGG- -5'
27472 3' -53.3 NC_005869.1 + 16164 0.69 0.487372
Target:  5'- uGGCAagagagcCCGGCggCAGCGGcGGGCCcGCCc -3'
miRNA:   3'- -CCGUa------GGUCGa-GUUGCU-CCUGGaUGG- -5'
27472 3' -53.3 NC_005869.1 + 2342 0.7 0.44551
Target:  5'- cGCAUCUucugguGGUUCAGgGAGGcggugaACCUGCCc -3'
miRNA:   3'- cCGUAGG------UCGAGUUgCUCC------UGGAUGG- -5'
27472 3' -53.3 NC_005869.1 + 1928 0.7 0.44551
Target:  5'- gGGuCAUCCGGCaguggCAGCG-GGGCCgggaugcgggACCa -3'
miRNA:   3'- -CC-GUAGGUCGa----GUUGCuCCUGGa---------UGG- -5'
27472 3' -53.3 NC_005869.1 + 21193 0.71 0.415469
Target:  5'- aGCAUCCAGUUCGACuccuccGuGGCCUgGCCg -3'
miRNA:   3'- cCGUAGGUCGAGUUGcu----C-CUGGA-UGG- -5'
27472 3' -53.3 NC_005869.1 + 27495 0.72 0.350446
Target:  5'- cGGCAucuUCCAGCUCGgagGCGGaGGCCgcuCCu -3'
miRNA:   3'- -CCGU---AGGUCGAGU---UGCUcCUGGau-GG- -5'
27472 3' -53.3 NC_005869.1 + 20061 0.72 0.336636
Target:  5'- aGGCcUCuCAGCUCAACGcgguggucgaccugcAGGACaggaaUACCg -3'
miRNA:   3'- -CCGuAG-GUCGAGUUGC---------------UCCUGg----AUGG- -5'
27472 3' -53.3 NC_005869.1 + 7689 0.75 0.243162
Target:  5'- uGCG-CCAGCUCGGCGAGGuCUggguuguggGCCa -3'
miRNA:   3'- cCGUaGGUCGAGUUGCUCCuGGa--------UGG- -5'
27472 3' -53.3 NC_005869.1 + 23688 0.78 0.151092
Target:  5'- aGCAUCCAGCUgcagCAGCGGccGGGCC-ACCg -3'
miRNA:   3'- cCGUAGGUCGA----GUUGCU--CCUGGaUGG- -5'
27472 3' -53.3 NC_005869.1 + 27441 1.14 0.000419
Target:  5'- aGGCAUCCAGCUCAACGAGGACCUACCc -3'
miRNA:   3'- -CCGUAGGUCGAGUUGCUCCUGGAUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.