Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27473 | 5' | -61.9 | NC_005869.1 | + | 27575 | 1.1 | 0.000109 |
Target: 5'- cCCUUCCCCGCAGCGGCGGCAUCGGCAg -3' miRNA: 3'- -GGAAGGGGCGUCGCCGCCGUAGCCGU- -5' |
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27473 | 5' | -61.9 | NC_005869.1 | + | 12634 | 0.76 | 0.046147 |
Target: 5'- uCCUgaccaaCCgGCAGCGGCGGCugcCGGCGg -3' miRNA: 3'- -GGAag----GGgCGUCGCCGCCGua-GCCGU- -5' |
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27473 | 5' | -61.9 | NC_005869.1 | + | 17836 | 0.76 | 0.050326 |
Target: 5'- ---gCCUcggCGCAGCGGCGGCAggCGGCGg -3' miRNA: 3'- ggaaGGG---GCGUCGCCGCCGUa-GCCGU- -5' |
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27473 | 5' | -61.9 | NC_005869.1 | + | 6242 | 0.75 | 0.059818 |
Target: 5'- cCCUUCCCUggcgaagcaGCAGCGGUuagGGCAcuggCGGCGg -3' miRNA: 3'- -GGAAGGGG---------CGUCGCCG---CCGUa---GCCGU- -5' |
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27473 | 5' | -61.9 | NC_005869.1 | + | 17570 | 0.74 | 0.071033 |
Target: 5'- cCCg--CCCGCAGCGGCGGUcccccgcccUCGGCu -3' miRNA: 3'- -GGaagGGGCGUCGCCGCCGu--------AGCCGu -5' |
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27473 | 5' | -61.9 | NC_005869.1 | + | 8512 | 0.74 | 0.071033 |
Target: 5'- gCCggCCuCCGCGGCcucGGCGGCggCGGCc -3' miRNA: 3'- -GGaaGG-GGCGUCG---CCGCCGuaGCCGu -5' |
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27473 | 5' | -61.9 | NC_005869.1 | + | 7887 | 0.73 | 0.091714 |
Target: 5'- gCUUCCuCCGgAGgGGCGGCAuggUgGGCGg -3' miRNA: 3'- gGAAGG-GGCgUCgCCGCCGU---AgCCGU- -5' |
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27473 | 5' | -61.9 | NC_005869.1 | + | 9429 | 0.72 | 0.094338 |
Target: 5'- aCCUcgCCCCGCAuGCGGCgcauGGUcUCGGUg -3' miRNA: 3'- -GGAa-GGGGCGU-CGCCG----CCGuAGCCGu -5' |
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27473 | 5' | -61.9 | NC_005869.1 | + | 20378 | 0.7 | 0.135533 |
Target: 5'- --cUCCCUGCGGCGGCGcuGC--UGGCAu -3' miRNA: 3'- ggaAGGGGCGUCGCCGC--CGuaGCCGU- -5' |
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27473 | 5' | -61.9 | NC_005869.1 | + | 9540 | 0.7 | 0.147157 |
Target: 5'- uCCguucUCCUgGCGccGCGGCGGCGU-GGCGg -3' miRNA: 3'- -GGa---AGGGgCGU--CGCCGCCGUAgCCGU- -5' |
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27473 | 5' | -61.9 | NC_005869.1 | + | 20724 | 0.7 | 0.151229 |
Target: 5'- ------gCGCGGCGGCGGCGgccggCGGCGg -3' miRNA: 3'- ggaagggGCGUCGCCGCCGUa----GCCGU- -5' |
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27473 | 5' | -61.9 | NC_005869.1 | + | 7606 | 0.69 | 0.154982 |
Target: 5'- gCggCCCgCGCAgGCGGCGGCGccgcagcUgGGCAu -3' miRNA: 3'- gGaaGGG-GCGU-CGCCGCCGU-------AgCCGU- -5' |
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27473 | 5' | -61.9 | NC_005869.1 | + | 16577 | 0.69 | 0.155404 |
Target: 5'- cCCUagCCCCGCGGCGGUccaGC--CGGCGc -3' miRNA: 3'- -GGAa-GGGGCGUCGCCGc--CGuaGCCGU- -5' |
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27473 | 5' | -61.9 | NC_005869.1 | + | 12151 | 0.69 | 0.155404 |
Target: 5'- gCCUgcgcggCUCCGCcuuaGGUGGUGGCGUuccCGGCGg -3' miRNA: 3'- -GGAa-----GGGGCG----UCGCCGCCGUA---GCCGU- -5' |
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27473 | 5' | -61.9 | NC_005869.1 | + | 18766 | 0.69 | 0.168559 |
Target: 5'- cCCggcCCCCGCGGCuccUGuGCGUCGGCGu -3' miRNA: 3'- -GGaa-GGGGCGUCGcc-GC-CGUAGCCGU- -5' |
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27473 | 5' | -61.9 | NC_005869.1 | + | 23354 | 0.69 | 0.177876 |
Target: 5'- cCCcUCCUCGC-GCGGCcGCGUCaGCGa -3' miRNA: 3'- -GGaAGGGGCGuCGCCGcCGUAGcCGU- -5' |
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27473 | 5' | -61.9 | NC_005869.1 | + | 15530 | 0.68 | 0.182703 |
Target: 5'- ---aCCCCGUGGCGGauguGGUggCGGCGg -3' miRNA: 3'- ggaaGGGGCGUCGCCg---CCGuaGCCGU- -5' |
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27473 | 5' | -61.9 | NC_005869.1 | + | 17056 | 0.68 | 0.182703 |
Target: 5'- aCggCCCUGCGgggcacgcggcGCGGgGGC-UCGGCAc -3' miRNA: 3'- gGaaGGGGCGU-----------CGCCgCCGuAGCCGU- -5' |
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27473 | 5' | -61.9 | NC_005869.1 | + | 15474 | 0.68 | 0.192707 |
Target: 5'- --aUCUCCuggGCGGCGGCGgGCGcUUGGCGg -3' miRNA: 3'- ggaAGGGG---CGUCGCCGC-CGU-AGCCGU- -5' |
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27473 | 5' | -61.9 | NC_005869.1 | + | 17245 | 0.68 | 0.197887 |
Target: 5'- gCCacCUCCGUGGCGGUGGg--CGGCAu -3' miRNA: 3'- -GGaaGGGGCGUCGCCGCCguaGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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