miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27475 5' -61.4 NC_005869.1 + 24099 0.66 0.316237
Target:  5'- aGCGCgu-GGUGGCCGaccuggCGCUGCUGCGc -3'
miRNA:   3'- -CGCGaugUCGCUGGCg-----GCGGUGGCGC- -5'
27475 5' -61.4 NC_005869.1 + 13425 0.66 0.308617
Target:  5'- cCGUggcCAGCuucucCCGCCGCCaccaGCCGCGc -3'
miRNA:   3'- cGCGau-GUCGcu---GGCGGCGG----UGGCGC- -5'
27475 5' -61.4 NC_005869.1 + 26521 0.66 0.308617
Target:  5'- cGCGCa--GGUGcUCGCCcaCCGCCGCGa -3'
miRNA:   3'- -CGCGaugUCGCuGGCGGc-GGUGGCGC- -5'
27475 5' -61.4 NC_005869.1 + 10659 0.66 0.308617
Target:  5'- cGCGCUcuCGGuCGcccucGCCGUCGCUgacgcgGCCGCGc -3'
miRNA:   3'- -CGCGAu-GUC-GC-----UGGCGGCGG------UGGCGC- -5'
27475 5' -61.4 NC_005869.1 + 17401 0.66 0.304113
Target:  5'- -aGCUGCGGCGccacgacggccugggGCCGgcCCGCCcGgCGCGg -3'
miRNA:   3'- cgCGAUGUCGC---------------UGGC--GGCGG-UgGCGC- -5'
27475 5' -61.4 NC_005869.1 + 384 0.66 0.301138
Target:  5'- cGCGCUGagaGGU--CCGCgGCgGCCGCc -3'
miRNA:   3'- -CGCGAUg--UCGcuGGCGgCGgUGGCGc -5'
27475 5' -61.4 NC_005869.1 + 24260 0.66 0.296718
Target:  5'- cGC-CUGCAGCGcGCCgGCCGCaaagaccucacccucCugCGCGc -3'
miRNA:   3'- -CGcGAUGUCGC-UGG-CGGCG---------------GugGCGC- -5'
27475 5' -61.4 NC_005869.1 + 31101 0.66 0.286602
Target:  5'- -aGCUGCccaGGCGGCCGCCcacaaacauGgUGCUGCGg -3'
miRNA:   3'- cgCGAUG---UCGCUGGCGG---------CgGUGGCGC- -5'
27475 5' -61.4 NC_005869.1 + 21942 0.66 0.286602
Target:  5'- cGCGCUG-GGCGAUCaCUGCCGCaCGUc -3'
miRNA:   3'- -CGCGAUgUCGCUGGcGGCGGUG-GCGc -5'
27475 5' -61.4 NC_005869.1 + 11139 0.66 0.286602
Target:  5'- cGCGCUGaccGCGcaGCUGCUGCUgAUCGCGc -3'
miRNA:   3'- -CGCGAUgu-CGC--UGGCGGCGG-UGGCGC- -5'
27475 5' -61.4 NC_005869.1 + 9931 0.66 0.286602
Target:  5'- gGCGCaGCAGCG-CCagGUCgGCCACCacGCGc -3'
miRNA:   3'- -CGCGaUGUCGCuGG--CGG-CGGUGG--CGC- -5'
27475 5' -61.4 NC_005869.1 + 16556 0.66 0.286602
Target:  5'- cCGCUcCAGCacccacGCCGCCccuaGCC-CCGCGg -3'
miRNA:   3'- cGCGAuGUCGc-----UGGCGG----CGGuGGCGC- -5'
27475 5' -61.4 NC_005869.1 + 17524 0.66 0.279544
Target:  5'- aGCGCcuCGGCG-UCGCCGCCguACCcCGg -3'
miRNA:   3'- -CGCGauGUCGCuGGCGGCGG--UGGcGC- -5'
27475 5' -61.4 NC_005869.1 + 25801 0.66 0.279544
Target:  5'- uGCGCUgggaccccccGCccgAGgGcCCGCCGCC-CCGCc -3'
miRNA:   3'- -CGCGA----------UG---UCgCuGGCGGCGGuGGCGc -5'
27475 5' -61.4 NC_005869.1 + 10248 0.67 0.272624
Target:  5'- -gGCaGCGGCGACgGCgCGgC-CCGCGa -3'
miRNA:   3'- cgCGaUGUCGCUGgCG-GCgGuGGCGC- -5'
27475 5' -61.4 NC_005869.1 + 3645 0.67 0.272624
Target:  5'- gGCGCUggcggaGCuGCGGCagcaGCUGCaggaGCUGCGg -3'
miRNA:   3'- -CGCGA------UGuCGCUGg---CGGCGg---UGGCGC- -5'
27475 5' -61.4 NC_005869.1 + 14689 0.67 0.272624
Target:  5'- gGUGCUcgccauguccaACAcGCGGuuGUCGCCcACCGCc -3'
miRNA:   3'- -CGCGA-----------UGU-CGCUggCGGCGG-UGGCGc -5'
27475 5' -61.4 NC_005869.1 + 21383 0.67 0.271257
Target:  5'- aGgGCUACcGCGACCGCaccuacuccuuCCugCGCa -3'
miRNA:   3'- -CgCGAUGuCGCUGGCGgc---------GGugGCGc -5'
27475 5' -61.4 NC_005869.1 + 33192 0.67 0.265843
Target:  5'- -aGUUcagACAGCaccuCCGCaGCCACCGCGc -3'
miRNA:   3'- cgCGA---UGUCGcu--GGCGgCGGUGGCGC- -5'
27475 5' -61.4 NC_005869.1 + 9896 0.67 0.265843
Target:  5'- gGCGUccaggugGguGCGACCGuaGCC-CCGCa -3'
miRNA:   3'- -CGCGa------UguCGCUGGCggCGGuGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.