miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27476 5' -51.6 NC_005869.1 + 26449 0.66 0.775741
Target:  5'- -cGGGCCGCcccucuuccuggagGUCUACaucGUGGGCCAcaACa -3'
miRNA:   3'- cuCCUGGUG--------------UAGAUGc--UACUCGGU--UG- -5'
27476 5' -51.6 NC_005869.1 + 17561 0.66 0.768168
Target:  5'- uGGGGACCAgugagGCGGUGGGCUcgucGGCg -3'
miRNA:   3'- -CUCCUGGUguagaUGCUACUCGG----UUG- -5'
27476 5' -51.6 NC_005869.1 + 12997 0.66 0.764898
Target:  5'- gGAGGGCCGCcucaugCUGCGGUccgcagccuccucaGAGCCc-- -3'
miRNA:   3'- -CUCCUGGUGua----GAUGCUA--------------CUCGGuug -5'
27476 5' -51.6 NC_005869.1 + 16646 0.67 0.70861
Target:  5'- gGGGGcaccaccgccgucaGCCGCAccugccugggUgUGCGGUGGGCUAGCa -3'
miRNA:   3'- -CUCC--------------UGGUGU----------AgAUGCUACUCGGUUG- -5'
27476 5' -51.6 NC_005869.1 + 22764 0.68 0.665467
Target:  5'- -cGGcCCACAUCUGuuUGGUcagcugcaGGGCCAGCa -3'
miRNA:   3'- cuCCuGGUGUAGAU--GCUA--------CUCGGUUG- -5'
27476 5' -51.6 NC_005869.1 + 27212 0.68 0.641898
Target:  5'- --uGACUACGUCcGCGAaGAGCCuGCg -3'
miRNA:   3'- cucCUGGUGUAGaUGCUaCUCGGuUG- -5'
27476 5' -51.6 NC_005869.1 + 17241 0.68 0.606498
Target:  5'- cAGGGCCACcUCcgugGCGGUGGG-CGGCa -3'
miRNA:   3'- cUCCUGGUGuAGa---UGCUACUCgGUUG- -5'
27476 5' -51.6 NC_005869.1 + 23633 0.69 0.594734
Target:  5'- gGGGGACCAgCAUCUGCac--AGCCAGa -3'
miRNA:   3'- -CUCCUGGU-GUAGAUGcuacUCGGUUg -5'
27476 5' -51.6 NC_005869.1 + 15344 0.69 0.583006
Target:  5'- cGGGGGgCGCAUCuUAUuGUGGGCCAcgGCg -3'
miRNA:   3'- -CUCCUgGUGUAG-AUGcUACUCGGU--UG- -5'
27476 5' -51.6 NC_005869.1 + 7504 0.71 0.438024
Target:  5'- aGGGGGgCACcUCgcgGCGGUGGGCgAGCa -3'
miRNA:   3'- -CUCCUgGUGuAGa--UGCUACUCGgUUG- -5'
27476 5' -51.6 NC_005869.1 + 16470 0.72 0.387897
Target:  5'- gGGGGACCGCcgCUGCGGgcGGgCGGCg -3'
miRNA:   3'- -CUCCUGGUGuaGAUGCUacUCgGUUG- -5'
27476 5' -51.6 NC_005869.1 + 24726 0.76 0.247566
Target:  5'- uGAGGGCCugGgggACGAgGAGCCGGCc -3'
miRNA:   3'- -CUCCUGGugUagaUGCUaCUCGGUUG- -5'
27476 5' -51.6 NC_005869.1 + 5672 0.86 0.05219
Target:  5'- gGAGGACCACAUCUggcgcugcACGAUGAgggcggugGCCAGCa -3'
miRNA:   3'- -CUCCUGGUGUAGA--------UGCUACU--------CGGUUG- -5'
27476 5' -51.6 NC_005869.1 + 28645 1.09 0.001068
Target:  5'- cGAGGACCACAUCUACGAUGAGCCAACc -3'
miRNA:   3'- -CUCCUGGUGUAGAUGCUACUCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.