miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27477 5' -58.2 NC_005869.1 + 25381 0.66 0.422152
Target:  5'- aCCUGCGCGCccUGGAaacgucuCUGGCucGCgCUCg -3'
miRNA:   3'- gGGAUGUGCGacACCU-------GACCG--CG-GAG- -5'
27477 5' -58.2 NC_005869.1 + 11371 0.66 0.403131
Target:  5'- uUCUACAUGCgcgcgGUGGugaagcuGCUGGUGCUg- -3'
miRNA:   3'- gGGAUGUGCGa----CACC-------UGACCGCGGag -5'
27477 5' -58.2 NC_005869.1 + 10637 0.67 0.376535
Target:  5'- gCCCUGgGCGCggaggGGGCgacGCGCuCUCg -3'
miRNA:   3'- -GGGAUgUGCGaca--CCUGac-CGCG-GAG- -5'
27477 5' -58.2 NC_005869.1 + 30341 0.67 0.350294
Target:  5'- uCCCUGaauuauucuaACGacuuuuCUGUGGACaaUGGCGcCCUCa -3'
miRNA:   3'- -GGGAUg---------UGC------GACACCUG--ACCGC-GGAG- -5'
27477 5' -58.2 NC_005869.1 + 29618 0.67 0.350294
Target:  5'- uCCCUGaauuauucuaACGacuuuuCUGUGGACaaUGGCGcCCUCa -3'
miRNA:   3'- -GGGAUg---------UGC------GACACCUG--ACCGC-GGAG- -5'
27477 5' -58.2 NC_005869.1 + 17806 0.68 0.333537
Target:  5'- aCCgagACucCGCgGUGGguuccGCgUGGCGCCUCg -3'
miRNA:   3'- gGGa--UGu-GCGaCACC-----UG-ACCGCGGAG- -5'
27477 5' -58.2 NC_005869.1 + 16877 0.69 0.251982
Target:  5'- gCCUccGCGCGCUGaUGGGCaccgagcgGGUGCCg- -3'
miRNA:   3'- gGGA--UGUGCGAC-ACCUGa-------CCGCGGag -5'
27477 5' -58.2 NC_005869.1 + 31716 0.71 0.187573
Target:  5'- uCCCgaugauguaacACAUGCUGcGGAUggugaucgGGCGCCUCa -3'
miRNA:   3'- -GGGa----------UGUGCGACaCCUGa-------CCGCGGAG- -5'
27477 5' -58.2 NC_005869.1 + 30406 1.12 0.000158
Target:  5'- aCCCUACACGCUGUGGACUGGCGCCUCa -3'
miRNA:   3'- -GGGAUGUGCGACACCUGACCGCGGAG- -5'
27477 5' -58.2 NC_005869.1 + 29683 1.12 0.000158
Target:  5'- aCCCUACACGCUGUGGACUGGCGCCUCa -3'
miRNA:   3'- -GGGAUGUGCGACACCUGACCGCGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.