Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27479 | 3' | -58.6 | NC_005869.1 | + | 21393 | 0.67 | 0.359483 |
Target: 5'- aCGCCGCcg--GCAGcCGCCGCUgCCg -3' miRNA: 3'- gGCGGCGaacaCGUC-GUGGUGGaGGg -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 18367 | 0.67 | 0.337568 |
Target: 5'- aCCGCCggugcaacagcagcaGCUgcgGCAGCAgCAgCUCCUc -3' miRNA: 3'- -GGCGG---------------CGAacaCGUCGUgGUgGAGGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 24087 | 0.68 | 0.318215 |
Target: 5'- uCCGCCGCcaccacCGcCGCCACCUCCg -3' miRNA: 3'- -GGCGGCGaacac-GUcGUGGUGGAGGg -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 23220 | 0.68 | 0.302735 |
Target: 5'- cCCGUCGUUgc-GCAGCugCACCacguugcggCCCc -3' miRNA: 3'- -GGCGGCGAacaCGUCGugGUGGa--------GGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 22621 | 0.68 | 0.302735 |
Target: 5'- -aGCCGCUUGuUGCGGUACaug--CCCa -3' miRNA: 3'- ggCGGCGAAC-ACGUCGUGguggaGGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 17468 | 0.68 | 0.298205 |
Target: 5'- aCCGCCGCggggcuaggggcggcGUgggugcuggagcggGCGGCuccaccACCACCUCCUg -3' miRNA: 3'- -GGCGGCGaa-------------CA--------------CGUCG------UGGUGGAGGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 22076 | 0.68 | 0.295214 |
Target: 5'- gCCGUCGCcUG-GgAGC-CCGCCUCgCg -3' miRNA: 3'- -GGCGGCGaACaCgUCGuGGUGGAGgG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 11010 | 0.68 | 0.28784 |
Target: 5'- aUGCCGCUggUGUGCgacugcggcuggGGCuGCCGCCaggugCCCc -3' miRNA: 3'- gGCGGCGA--ACACG------------UCG-UGGUGGa----GGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 13119 | 0.68 | 0.28784 |
Target: 5'- gUGUCGUUgc-GCAGCAUgGCCUCCa -3' miRNA: 3'- gGCGGCGAacaCGUCGUGgUGGAGGg -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 26538 | 0.68 | 0.28784 |
Target: 5'- aCCGCCGCga--GguGCcCC-CCUCCUu -3' miRNA: 3'- -GGCGGCGaacaCguCGuGGuGGAGGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 8131 | 0.69 | 0.280612 |
Target: 5'- gCgGCCGCa-GUGCucGCACUucuggGCCUCCUg -3' miRNA: 3'- -GgCGGCGaaCACGu-CGUGG-----UGGAGGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 16599 | 0.69 | 0.266589 |
Target: 5'- aCCGCCGCggGcGCcGgGCCACCggaaCCa -3' miRNA: 3'- -GGCGGCGaaCaCGuCgUGGUGGag--GG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 16669 | 0.69 | 0.259792 |
Target: 5'- gCCGCgGCgcUGgagcggGCGGCgGCCGCCgugCCCc -3' miRNA: 3'- -GGCGgCGa-ACa-----CGUCG-UGGUGGa--GGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 10453 | 0.69 | 0.259121 |
Target: 5'- aCGCUGCUgccGgacgGCAGCACCcuggaguGCUUCCg -3' miRNA: 3'- gGCGGCGAa--Ca---CGUCGUGG-------UGGAGGg -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 25750 | 0.69 | 0.253138 |
Target: 5'- aCUGCCGCUgcaaccucUGcGCAccGCACCgcuGCCUCgCCa -3' miRNA: 3'- -GGCGGCGA--------ACaCGU--CGUGG---UGGAG-GG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 21753 | 0.69 | 0.253138 |
Target: 5'- gCGCCGCcugcaggaaggUGUGCGGCcCCgagcggaacACCUCCg -3' miRNA: 3'- gGCGGCGa----------ACACGUCGuGG---------UGGAGGg -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 23873 | 0.69 | 0.246624 |
Target: 5'- uCCGCCGCUccUGcacggGCGgagaggccgcGCGCUugcgGCCUCCCc -3' miRNA: 3'- -GGCGGCGA--ACa----CGU----------CGUGG----UGGAGGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 15996 | 0.69 | 0.246624 |
Target: 5'- gCGCCGCUggacgGgGCGGCGcgugcgcgcCCACCUaccgCCCg -3' miRNA: 3'- gGCGGCGAa----CaCGUCGU---------GGUGGA----GGG- -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 17209 | 0.69 | 0.245339 |
Target: 5'- aCCGCCacggGCggcagUGgggucuguacggGCAGgGCCACCUCCg -3' miRNA: 3'- -GGCGG----CGa----ACa-----------CGUCgUGGUGGAGGg -5' |
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27479 | 3' | -58.6 | NC_005869.1 | + | 15485 | 0.7 | 0.234014 |
Target: 5'- gCCGCCGCgc--GCGGCGCCGuuCUUCgCg -3' miRNA: 3'- -GGCGGCGaacaCGUCGUGGU--GGAGgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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