miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27479 5' -49.9 NC_005869.1 + 8786 0.66 0.882116
Target:  5'- uUGAGGG--UGUGGUGGAgCACGugcugaccGAGCc -3'
miRNA:   3'- gACUCCUagGCACUACCU-GUGU--------UUCG- -5'
27479 5' -49.9 NC_005869.1 + 20930 0.66 0.882116
Target:  5'- -gGAGGAUgcCCGgGAcgGGACGCGcgagAGGCc -3'
miRNA:   3'- gaCUCCUA--GGCaCUa-CCUGUGU----UUCG- -5'
27479 5' -49.9 NC_005869.1 + 17827 0.66 0.882116
Target:  5'- uUGGuGGUCCGgccGcgGGACGCGGGGg -3'
miRNA:   3'- gACUcCUAGGCa--CuaCCUGUGUUUCg -5'
27479 5' -49.9 NC_005869.1 + 8406 0.66 0.873874
Target:  5'- -aGAGGGgcggcgggcacUCgCGguagacGGUGGGCACAAAGUc -3'
miRNA:   3'- gaCUCCU-----------AG-GCa-----CUACCUGUGUUUCG- -5'
27479 5' -49.9 NC_005869.1 + 1918 0.67 0.82852
Target:  5'- -gGAGGAgCCGaUGGagcUGGugGCGcAGCg -3'
miRNA:   3'- gaCUCCUaGGC-ACU---ACCugUGUuUCG- -5'
27479 5' -49.9 NC_005869.1 + 10917 0.67 0.818692
Target:  5'- uUGAGGggCgCGUGGaGGAgGCGGGGg -3'
miRNA:   3'- gACUCCuaG-GCACUaCCUgUGUUUCg -5'
27479 5' -49.9 NC_005869.1 + 18846 0.67 0.808637
Target:  5'- gUGGGGGUCCGcgcgcGcgGGugGCAAAa- -3'
miRNA:   3'- gACUCCUAGGCa----CuaCCugUGUUUcg -5'
27479 5' -49.9 NC_005869.1 + 12370 0.67 0.798369
Target:  5'- gUGAGGGUgCCc--AUGGACAUGAAGUu -3'
miRNA:   3'- gACUCCUA-GGcacUACCUGUGUUUCG- -5'
27479 5' -49.9 NC_005869.1 + 16866 0.68 0.787901
Target:  5'- cCUGAcccccGGccUCCGcgcgcUGAUGGGCACcGAGCg -3'
miRNA:   3'- -GACU-----CCu-AGGC-----ACUACCUGUGuUUCG- -5'
27479 5' -49.9 NC_005869.1 + 16132 0.68 0.787901
Target:  5'- -aGAuGGAUgCCGcgaUGAUGGGCACc-AGCg -3'
miRNA:   3'- gaCU-CCUA-GGC---ACUACCUGUGuuUCG- -5'
27479 5' -49.9 NC_005869.1 + 3744 0.68 0.744298
Target:  5'- -gGAGGAgauUGUGGUGGACGagGAGGUg -3'
miRNA:   3'- gaCUCCUag-GCACUACCUGUg-UUUCG- -5'
27479 5' -49.9 NC_005869.1 + 7735 0.69 0.710172
Target:  5'- -aGAGGGugUCgGUGAggcGGGCcuGCAGGGCg -3'
miRNA:   3'- gaCUCCU--AGgCACUa--CCUG--UGUUUCG- -5'
27479 5' -49.9 NC_005869.1 + 2671 0.69 0.698601
Target:  5'- -gGGGGAgUgGUGGUcccggcagagGGACGCGGAGCg -3'
miRNA:   3'- gaCUCCUaGgCACUA----------CCUGUGUUUCG- -5'
27479 5' -49.9 NC_005869.1 + 16530 0.7 0.628089
Target:  5'- -cGAGGcgCUcUGG-GGGCGCGAGGCg -3'
miRNA:   3'- gaCUCCuaGGcACUaCCUGUGUUUCG- -5'
27479 5' -49.9 NC_005869.1 + 8252 0.78 0.246206
Target:  5'- uUGAGGAgggCgGUGuUGGugGCGAGGCa -3'
miRNA:   3'- gACUCCUa--GgCACuACCugUGUUUCG- -5'
27479 5' -49.9 NC_005869.1 + 31028 1.12 0.001281
Target:  5'- gCUGAGGAUCCGUGAUGGACACAAAGCc -3'
miRNA:   3'- -GACUCCUAGGCACUACCUGUGUUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.