miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2748 3' -51.8 NC_001491.2 + 49698 0.66 0.987303
Target:  5'- gCGGCcacggUAGAuuguuguuuGGgGCCA-AACACCCCa -3'
miRNA:   3'- -GUCGaa---GUCU---------UCgCGGUaUUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 83728 0.66 0.987303
Target:  5'- uGGCg-CAGGuuuuCGCCAUucacaAACGCCCCu -3'
miRNA:   3'- gUCGaaGUCUuc--GCGGUA-----UUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 124477 0.66 0.987303
Target:  5'- -----cCAGAGGgGCCAggcaGCCCCg -3'
miRNA:   3'- gucgaaGUCUUCgCGGUauugUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 96705 0.66 0.987143
Target:  5'- -uGCUUUuGggGCGaCCcgagagcgcgguaGUGACGCCUCg -3'
miRNA:   3'- guCGAAGuCuuCGC-GG-------------UAUUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 125074 0.66 0.986651
Target:  5'- gCGGCga-GGAGGCGCCGagaggcgagcguaAGCACCUg -3'
miRNA:   3'- -GUCGaagUCUUCGCGGUa------------UUGUGGGg -5'
2748 3' -51.8 NC_001491.2 + 67527 0.66 0.985625
Target:  5'- gAGCUggAGAauAGaCGCCGgacaGCCCCg -3'
miRNA:   3'- gUCGAagUCU--UC-GCGGUauugUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 8956 0.66 0.985625
Target:  5'- -cGCUggaUCAGucGCGUgGUGACGagcucuCCCCg -3'
miRNA:   3'- guCGA---AGUCuuCGCGgUAUUGU------GGGG- -5'
2748 3' -51.8 NC_001491.2 + 135347 0.66 0.985625
Target:  5'- -uGCccagCAG-AGUGCUAUGGCACCUa -3'
miRNA:   3'- guCGaa--GUCuUCGCGGUAUUGUGGGg -5'
2748 3' -51.8 NC_001491.2 + 107442 0.66 0.985625
Target:  5'- gGGCUcgucuucaugcUguGggGCGCCc--ACGCCCa -3'
miRNA:   3'- gUCGA-----------AguCuuCGCGGuauUGUGGGg -5'
2748 3' -51.8 NC_001491.2 + 16767 0.66 0.985625
Target:  5'- uUAGCU---GAAGCGCCAU--CGCCUg -3'
miRNA:   3'- -GUCGAaguCUUCGCGGUAuuGUGGGg -5'
2748 3' -51.8 NC_001491.2 + 114302 0.66 0.985625
Target:  5'- cCGGCgUguGGAGCugGUgGUugAGCACCCCg -3'
miRNA:   3'- -GUCGaAguCUUCG--CGgUA--UUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 4010 0.66 0.983781
Target:  5'- aUAGCgUguGuAGCGCCccguuUAGCGCCgCCa -3'
miRNA:   3'- -GUCGaAguCuUCGCGGu----AUUGUGG-GG- -5'
2748 3' -51.8 NC_001491.2 + 31961 0.66 0.983781
Target:  5'- gGGag-CGGAcGCGCCAgagccGCACCCa -3'
miRNA:   3'- gUCgaaGUCUuCGCGGUau---UGUGGGg -5'
2748 3' -51.8 NC_001491.2 + 73016 0.66 0.983781
Target:  5'- gGGCUgaauacuucCAGGAG-GCUAaauuGCACCCCg -3'
miRNA:   3'- gUCGAa--------GUCUUCgCGGUau--UGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 71571 0.66 0.981764
Target:  5'- uGGUguugCGGAGGauUCAUAGCGCCCUu -3'
miRNA:   3'- gUCGaa--GUCUUCgcGGUAUUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 147973 0.66 0.981764
Target:  5'- gGGCcgcCAGcAGCGCCGaGAguCCCCc -3'
miRNA:   3'- gUCGaa-GUCuUCGCGGUaUUguGGGG- -5'
2748 3' -51.8 NC_001491.2 + 138204 0.66 0.981764
Target:  5'- -cGCcugaagUAGGAGCGCCcgAGCAUgcaCCCg -3'
miRNA:   3'- guCGaa----GUCUUCGCGGuaUUGUG---GGG- -5'
2748 3' -51.8 NC_001491.2 + 137459 0.66 0.981764
Target:  5'- uGGUguuaCGGAAacacgcGUGCCAagAACGCCCCa -3'
miRNA:   3'- gUCGaa--GUCUU------CGCGGUa-UUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 2763 0.66 0.979564
Target:  5'- gAGUUUCAGGcauaCGCCcccAUACCCCg -3'
miRNA:   3'- gUCGAAGUCUuc--GCGGuauUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 143647 0.66 0.979564
Target:  5'- -cGCccCuGGA-CGCCAUGACACCUCg -3'
miRNA:   3'- guCGaaGuCUUcGCGGUAUUGUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.