Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
2748 | 3' | -51.8 | NC_001491.2 | + | 115897 | 0.73 | 0.767461 |
Target: 5'- cCGGCUccuccUCGGAcgaccGUGCCAUccacgGGCGCCCCa -3' miRNA: 3'- -GUCGA-----AGUCUu----CGCGGUA-----UUGUGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 120758 | 0.74 | 0.727386 |
Target: 5'- -cGUcUCGGGAGCGCgCAUGGCACCgugCCa -3' miRNA: 3'- guCGaAGUCUUCGCG-GUAUUGUGG---GG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 141557 | 0.76 | 0.580121 |
Target: 5'- gGGC--CAGggGCguucugcgccccGCCGUGGCGCCCCg -3' miRNA: 3'- gUCGaaGUCuuCG------------CGGUAUUGUGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 2584 | 0.84 | 0.233458 |
Target: 5'- aCAGCUguuuaaaaAGAAGCGCCAgacGCGCCCCu -3' miRNA: 3'- -GUCGAag------UCUUCGCGGUau-UGUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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