miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2748 3' -51.8 NC_001491.2 + 17745 0.68 0.958372
Target:  5'- -cGCUggagCAuGGGgGCCAUGACAUCCg -3'
miRNA:   3'- guCGAa---GUcUUCgCGGUAUUGUGGGg -5'
2748 3' -51.8 NC_001491.2 + 77321 0.68 0.94536
Target:  5'- -cGCgaCAGuucuaccGAGCGCCAU-ACACCCg -3'
miRNA:   3'- guCGaaGUC-------UUCGCGGUAuUGUGGGg -5'
2748 3' -51.8 NC_001491.2 + 140103 0.68 0.945818
Target:  5'- -cGCUcCGGAgcGGCGCCGggcCGCCCg -3'
miRNA:   3'- guCGAaGUCU--UCGCGGUauuGUGGGg -5'
2748 3' -51.8 NC_001491.2 + 126641 0.68 0.941133
Target:  5'- -cGCuUUCAGAGGCGCUAUcGCAgUCg -3'
miRNA:   3'- guCG-AAGUCUUCGCGGUAuUGUgGGg -5'
2748 3' -51.8 NC_001491.2 + 70883 0.68 0.945818
Target:  5'- gCAGCUUUAGcaucagcGCGUCA-AGCGCCCa -3'
miRNA:   3'- -GUCGAAGUCuu-----CGCGGUaUUGUGGGg -5'
2748 3' -51.8 NC_001491.2 + 30210 0.68 0.945818
Target:  5'- uGGCcuucaucauagUCAGGAGUGCUGUAAUgaccggaaGCCCCu -3'
miRNA:   3'- gUCGa----------AGUCUUCGCGGUAUUG--------UGGGG- -5'
2748 3' -51.8 NC_001491.2 + 140557 0.68 0.945818
Target:  5'- aAGCgugaauGAcAGCGCCAUcACACCCa -3'
miRNA:   3'- gUCGaagu--CU-UCGCGGUAuUGUGGGg -5'
2748 3' -51.8 NC_001491.2 + 53216 0.68 0.941133
Target:  5'- cCGGCgUCGGGAGgGCCGUGggcuaccagggaGCaaagguucuagACCCCg -3'
miRNA:   3'- -GUCGaAGUCUUCgCGGUAU------------UG-----------UGGGG- -5'
2748 3' -51.8 NC_001491.2 + 146214 0.68 0.941133
Target:  5'- gGGCc-CAGAgcgcguucccGGcCGCCAUGGCGuCCCCg -3'
miRNA:   3'- gUCGaaGUCU----------UC-GCGGUAUUGU-GGGG- -5'
2748 3' -51.8 NC_001491.2 + 19572 0.68 0.940651
Target:  5'- gAGUUUUAGAguuggggGGUGCCGgUAGCGgCCCu -3'
miRNA:   3'- gUCGAAGUCU-------UCGCGGU-AUUGUgGGG- -5'
2748 3' -51.8 NC_001491.2 + 148868 0.67 0.962071
Target:  5'- gGGCUccggCAGGcacAGCuCCGUGGC-CCCCa -3'
miRNA:   3'- gUCGAa---GUCU---UCGcGGUAUUGuGGGG- -5'
2748 3' -51.8 NC_001491.2 + 137379 0.67 0.962071
Target:  5'- -uGCgaCAGuAAGCGCCAc-GCGCCgCCg -3'
miRNA:   3'- guCGaaGUC-UUCGCGGUauUGUGG-GG- -5'
2748 3' -51.8 NC_001491.2 + 81654 0.67 0.962071
Target:  5'- uCGGCUaUgAGcuGUGUCAUAuuACGCCCCu -3'
miRNA:   3'- -GUCGA-AgUCuuCGCGGUAU--UGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 47658 0.67 0.965536
Target:  5'- -cGCUUCAGAGGUuuuuGCCAgccucgccAGCAUCuCCa -3'
miRNA:   3'- guCGAAGUCUUCG----CGGUa-------UUGUGG-GG- -5'
2748 3' -51.8 NC_001491.2 + 14488 0.67 0.965536
Target:  5'- uGGCUggCGuGAAgGCGCCAgGAUACCUCc -3'
miRNA:   3'- gUCGAa-GU-CUU-CGCGGUaUUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 86167 0.67 0.968771
Target:  5'- gCAGC-UCGGggGCGCgCu--GCGCCa- -3'
miRNA:   3'- -GUCGaAGUCuuCGCG-GuauUGUGGgg -5'
2748 3' -51.8 NC_001491.2 + 30588 0.67 0.974583
Target:  5'- -uGCUcUAGggGUGUUAUGGCGCUUCu -3'
miRNA:   3'- guCGAaGUCuuCGCGGUAUUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 97464 0.67 0.974583
Target:  5'- aAGCUUCccacGgcGCGCUuaAGCGCCgCCg -3'
miRNA:   3'- gUCGAAGu---CuuCGCGGuaUUGUGG-GG- -5'
2748 3' -51.8 NC_001491.2 + 94512 0.67 0.965536
Target:  5'- gCAGCUgucgCAGAAGaGCCucuGCuACCCUc -3'
miRNA:   3'- -GUCGAa---GUCUUCgCGGuauUG-UGGGG- -5'
2748 3' -51.8 NC_001491.2 + 137459 0.66 0.981764
Target:  5'- uGGUguuaCGGAAacacgcGUGCCAagAACGCCCCa -3'
miRNA:   3'- gUCGaa--GUCUU------CGCGGUa-UUGUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.