Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2748 | 3' | -51.8 | NC_001491.2 | + | 2584 | 0.84 | 0.233458 |
Target: 5'- aCAGCUguuuaaaaAGAAGCGCCAgacGCGCCCCu -3' miRNA: 3'- -GUCGAag------UCUUCGCGGUau-UGUGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 141557 | 0.76 | 0.580121 |
Target: 5'- gGGC--CAGggGCguucugcgccccGCCGUGGCGCCCCg -3' miRNA: 3'- gUCGaaGUCuuCG------------CGGUAUUGUGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 120758 | 0.74 | 0.727386 |
Target: 5'- -cGUcUCGGGAGCGCgCAUGGCACCgugCCa -3' miRNA: 3'- guCGaAGUCUUCGCG-GUAUUGUGG---GG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 115897 | 0.73 | 0.767461 |
Target: 5'- cCGGCUccuccUCGGAcgaccGUGCCAUccacgGGCGCCCCa -3' miRNA: 3'- -GUCGA-----AGUCUu----CGCGGUA-----UUGUGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 116046 | 0.72 | 0.805465 |
Target: 5'- gAGCggCGGAGGCGCCGgggcuACgACCgCCa -3' miRNA: 3'- gUCGaaGUCUUCGCGGUau---UG-UGG-GG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 119553 | 0.71 | 0.860427 |
Target: 5'- gGGCgUUCAccuuuaugcauaugaGAGGCGCUAUucGGCAUCCCg -3' miRNA: 3'- gUCG-AAGU---------------CUUCGCGGUA--UUGUGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 121688 | 0.7 | 0.8917 |
Target: 5'- aGGCgguUCAcaucGggGCGCCAcggcggggcgcagAACGCCCCu -3' miRNA: 3'- gUCGa--AGU----CuuCGCGGUa------------UUGUGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 34420 | 0.7 | 0.893085 |
Target: 5'- aCGGCcgucgcaugggCAGAgAGCGCCccggagcuuaAUAGCGCCCCc -3' miRNA: 3'- -GUCGaa---------GUCU-UCGCGG----------UAUUGUGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 117600 | 0.7 | 0.894459 |
Target: 5'- uCGGCUcuggCGGGAGCGUCGaAGCgcaagcgggccaACCCCa -3' miRNA: 3'- -GUCGAa---GUCUUCGCGGUaUUG------------UGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 84783 | 0.7 | 0.894459 |
Target: 5'- cCAGCaaaaaCAGu-GCGCCAUAACGaacauuCCCCa -3' miRNA: 3'- -GUCGaa---GUCuuCGCGGUAUUGU------GGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 1565 | 0.69 | 0.916293 |
Target: 5'- cCGGCUauucagCGGggGCGCaCAgcccagcgaugcgcGGCGCCCCc -3' miRNA: 3'- -GUCGAa-----GUCuuCGCG-GUa-------------UUGUGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 129151 | 0.69 | 0.925549 |
Target: 5'- aCAGCaaCAGuuuGCGCgCAUAGaugaACCCCa -3' miRNA: 3'- -GUCGaaGUCuu-CGCG-GUAUUg---UGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 137678 | 0.69 | 0.925549 |
Target: 5'- gAGCgggcgCGGGAGCGCgcgAGCGCCgCCu -3' miRNA: 3'- gUCGaa---GUCUUCGCGguaUUGUGG-GG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 88492 | 0.69 | 0.931001 |
Target: 5'- -cGCUUCAGu--CGCCuggugGACACCUCu -3' miRNA: 3'- guCGAAGUCuucGCGGua---UUGUGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 19572 | 0.68 | 0.940651 |
Target: 5'- gAGUUUUAGAguuggggGGUGCCGgUAGCGgCCCu -3' miRNA: 3'- gUCGAAGUCU-------UCGCGGU-AUUGUgGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 126641 | 0.68 | 0.941133 |
Target: 5'- -cGCuUUCAGAGGCGCUAUcGCAgUCg -3' miRNA: 3'- guCG-AAGUCUUCGCGGUAuUGUgGGg -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 146214 | 0.68 | 0.941133 |
Target: 5'- gGGCc-CAGAgcgcguucccGGcCGCCAUGGCGuCCCCg -3' miRNA: 3'- gUCGaaGUCU----------UC-GCGGUAUUGU-GGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 53216 | 0.68 | 0.941133 |
Target: 5'- cCGGCgUCGGGAGgGCCGUGggcuaccagggaGCaaagguucuagACCCCg -3' miRNA: 3'- -GUCGaAGUCUUCgCGGUAU------------UG-----------UGGGG- -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 77321 | 0.68 | 0.94536 |
Target: 5'- -cGCgaCAGuucuaccGAGCGCCAU-ACACCCg -3' miRNA: 3'- guCGaaGUC-------UUCGCGGUAuUGUGGGg -5' |
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2748 | 3' | -51.8 | NC_001491.2 | + | 70883 | 0.68 | 0.945818 |
Target: 5'- gCAGCUUUAGcaucagcGCGUCA-AGCGCCCa -3' miRNA: 3'- -GUCGAAGUCuu-----CGCGGUaUUGUGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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