miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2748 3' -51.8 NC_001491.2 + 115439 0.66 0.979564
Target:  5'- -cGCUUCGGGgagcuGGCgGCCA--GCGgCCCg -3'
miRNA:   3'- guCGAAGUCU-----UCG-CGGUauUGUgGGG- -5'
2748 3' -51.8 NC_001491.2 + 47400 0.66 0.977174
Target:  5'- aCAGCaaCAGcAGGCGCCgGUGGCGuucaaCCCa -3'
miRNA:   3'- -GUCGaaGUC-UUCGCGG-UAUUGUg----GGG- -5'
2748 3' -51.8 NC_001491.2 + 117447 0.66 0.977174
Target:  5'- gCAGCaUCGGccccGGCGgCGgcuucguGCGCCCCg -3'
miRNA:   3'- -GUCGaAGUCu---UCGCgGUau-----UGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 144302 0.66 0.977174
Target:  5'- gAGCUccgccgaggCAGAAGcCGCCcgGGuCugCCCg -3'
miRNA:   3'- gUCGAa--------GUCUUC-GCGGuaUU-GugGGG- -5'
2748 3' -51.8 NC_001491.2 + 61537 0.66 0.977174
Target:  5'- aCGGCaacCAGAGGa--CAUGACGCCUCg -3'
miRNA:   3'- -GUCGaa-GUCUUCgcgGUAUUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 97464 0.67 0.974583
Target:  5'- aAGCUUCccacGgcGCGCUuaAGCGCCgCCg -3'
miRNA:   3'- gUCGAAGu---CuuCGCGGuaUUGUGG-GG- -5'
2748 3' -51.8 NC_001491.2 + 30588 0.67 0.974583
Target:  5'- -uGCUcUAGggGUGUUAUGGCGCUUCu -3'
miRNA:   3'- guCGAaGUCuuCGCGGUAUUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 86167 0.67 0.968771
Target:  5'- gCAGC-UCGGggGCGCgCu--GCGCCa- -3'
miRNA:   3'- -GUCGaAGUCuuCGCG-GuauUGUGGgg -5'
2748 3' -51.8 NC_001491.2 + 94512 0.67 0.965536
Target:  5'- gCAGCUgucgCAGAAGaGCCucuGCuACCCUc -3'
miRNA:   3'- -GUCGAa---GUCUUCgCGGuauUG-UGGGG- -5'
2748 3' -51.8 NC_001491.2 + 47658 0.67 0.965536
Target:  5'- -cGCUUCAGAGGUuuuuGCCAgccucgccAGCAUCuCCa -3'
miRNA:   3'- guCGAAGUCUUCG----CGGUa-------UUGUGG-GG- -5'
2748 3' -51.8 NC_001491.2 + 14488 0.67 0.965536
Target:  5'- uGGCUggCGuGAAgGCGCCAgGAUACCUCc -3'
miRNA:   3'- gUCGAa-GU-CUU-CGCGGUaUUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 81654 0.67 0.962071
Target:  5'- uCGGCUaUgAGcuGUGUCAUAuuACGCCCCu -3'
miRNA:   3'- -GUCGA-AgUCuuCGCGGUAU--UGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 137379 0.67 0.962071
Target:  5'- -uGCgaCAGuAAGCGCCAc-GCGCCgCCg -3'
miRNA:   3'- guCGaaGUC-UUCGCGGUauUGUGG-GG- -5'
2748 3' -51.8 NC_001491.2 + 148868 0.67 0.962071
Target:  5'- gGGCUccggCAGGcacAGCuCCGUGGC-CCCCa -3'
miRNA:   3'- gUCGAa---GUCU---UCGcGGUAUUGuGGGG- -5'
2748 3' -51.8 NC_001491.2 + 17745 0.68 0.958372
Target:  5'- -cGCUggagCAuGGGgGCCAUGACAUCCg -3'
miRNA:   3'- guCGAa---GUcUUCgCGGUAUUGUGGGg -5'
2748 3' -51.8 NC_001491.2 + 68730 0.68 0.958372
Target:  5'- -uGCagCGGAgAGCGCCGacgccgccACGCCCCa -3'
miRNA:   3'- guCGaaGUCU-UCGCGGUau------UGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 97233 0.68 0.954433
Target:  5'- aCAGCaugUAGAcgAGCGCCugaaGAUGCCCUg -3'
miRNA:   3'- -GUCGaa-GUCU--UCGCGGua--UUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 123473 0.68 0.954433
Target:  5'- aCAGC-UCGGGcucGGCGCCcgccauguugaGUAGCGCggCCCa -3'
miRNA:   3'- -GUCGaAGUCU---UCGCGG-----------UAUUGUG--GGG- -5'
2748 3' -51.8 NC_001491.2 + 148689 0.68 0.954433
Target:  5'- gCAGCUcggggaUCAGAAGCuCCGagGGCuccacgGCCCCa -3'
miRNA:   3'- -GUCGA------AGUCUUCGcGGUa-UUG------UGGGG- -5'
2748 3' -51.8 NC_001491.2 + 54883 0.68 0.945818
Target:  5'- gAGaCUUCGGAgAGCGCCucacacgAugACCCa -3'
miRNA:   3'- gUC-GAAGUCU-UCGCGGua-----UugUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.