miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2748 3' -51.8 NC_001491.2 + 117447 0.66 0.977174
Target:  5'- gCAGCaUCGGccccGGCGgCGgcuucguGCGCCCCg -3'
miRNA:   3'- -GUCGaAGUCu---UCGCgGUau-----UGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 117600 0.7 0.894459
Target:  5'- uCGGCUcuggCGGGAGCGUCGaAGCgcaagcgggccaACCCCa -3'
miRNA:   3'- -GUCGAa---GUCUUCGCGGUaUUG------------UGGGG- -5'
2748 3' -51.8 NC_001491.2 + 119553 0.71 0.860427
Target:  5'- gGGCgUUCAccuuuaugcauaugaGAGGCGCUAUucGGCAUCCCg -3'
miRNA:   3'- gUCG-AAGU---------------CUUCGCGGUA--UUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 120758 0.74 0.727386
Target:  5'- -cGUcUCGGGAGCGCgCAUGGCACCgugCCa -3'
miRNA:   3'- guCGaAGUCUUCGCG-GUAUUGUGG---GG- -5'
2748 3' -51.8 NC_001491.2 + 121688 0.7 0.8917
Target:  5'- aGGCgguUCAcaucGggGCGCCAcggcggggcgcagAACGCCCCu -3'
miRNA:   3'- gUCGa--AGU----CuuCGCGGUa------------UUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 123473 0.68 0.954433
Target:  5'- aCAGC-UCGGGcucGGCGCCcgccauguugaGUAGCGCggCCCa -3'
miRNA:   3'- -GUCGaAGUCU---UCGCGG-----------UAUUGUG--GGG- -5'
2748 3' -51.8 NC_001491.2 + 124477 0.66 0.987303
Target:  5'- -----cCAGAGGgGCCAggcaGCCCCg -3'
miRNA:   3'- gucgaaGUCUUCgCGGUauugUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 125074 0.66 0.986651
Target:  5'- gCGGCga-GGAGGCGCCGagaggcgagcguaAGCACCUg -3'
miRNA:   3'- -GUCGaagUCUUCGCGGUa------------UUGUGGGg -5'
2748 3' -51.8 NC_001491.2 + 126641 0.68 0.941133
Target:  5'- -cGCuUUCAGAGGCGCUAUcGCAgUCg -3'
miRNA:   3'- guCG-AAGUCUUCGCGGUAuUGUgGGg -5'
2748 3' -51.8 NC_001491.2 + 129151 0.69 0.925549
Target:  5'- aCAGCaaCAGuuuGCGCgCAUAGaugaACCCCa -3'
miRNA:   3'- -GUCGaaGUCuu-CGCG-GUAUUg---UGGGG- -5'
2748 3' -51.8 NC_001491.2 + 135347 0.66 0.985625
Target:  5'- -uGCccagCAG-AGUGCUAUGGCACCUa -3'
miRNA:   3'- guCGaa--GUCuUCGCGGUAUUGUGGGg -5'
2748 3' -51.8 NC_001491.2 + 137379 0.67 0.962071
Target:  5'- -uGCgaCAGuAAGCGCCAc-GCGCCgCCg -3'
miRNA:   3'- guCGaaGUC-UUCGCGGUauUGUGG-GG- -5'
2748 3' -51.8 NC_001491.2 + 137459 0.66 0.981764
Target:  5'- uGGUguuaCGGAAacacgcGUGCCAagAACGCCCCa -3'
miRNA:   3'- gUCGaa--GUCUU------CGCGGUa-UUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 137678 0.69 0.925549
Target:  5'- gAGCgggcgCGGGAGCGCgcgAGCGCCgCCu -3'
miRNA:   3'- gUCGaa---GUCUUCGCGguaUUGUGG-GG- -5'
2748 3' -51.8 NC_001491.2 + 138204 0.66 0.981764
Target:  5'- -cGCcugaagUAGGAGCGCCcgAGCAUgcaCCCg -3'
miRNA:   3'- guCGaa----GUCUUCGCGGuaUUGUG---GGG- -5'
2748 3' -51.8 NC_001491.2 + 140103 0.68 0.945818
Target:  5'- -cGCUcCGGAgcGGCGCCGggcCGCCCg -3'
miRNA:   3'- guCGAaGUCU--UCGCGGUauuGUGGGg -5'
2748 3' -51.8 NC_001491.2 + 140557 0.68 0.945818
Target:  5'- aAGCgugaauGAcAGCGCCAUcACACCCa -3'
miRNA:   3'- gUCGaagu--CU-UCGCGGUAuUGUGGGg -5'
2748 3' -51.8 NC_001491.2 + 141557 0.76 0.580121
Target:  5'- gGGC--CAGggGCguucugcgccccGCCGUGGCGCCCCg -3'
miRNA:   3'- gUCGaaGUCuuCG------------CGGUAUUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 143647 0.66 0.979564
Target:  5'- -cGCccCuGGA-CGCCAUGACACCUCg -3'
miRNA:   3'- guCGaaGuCUUcGCGGUAUUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 144302 0.66 0.977174
Target:  5'- gAGCUccgccgaggCAGAAGcCGCCcgGGuCugCCCg -3'
miRNA:   3'- gUCGAa--------GUCUUC-GCGGuaUU-GugGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.