miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2748 3' -51.8 NC_001491.2 + 120758 0.74 0.727386
Target:  5'- -cGUcUCGGGAGCGCgCAUGGCACCgugCCa -3'
miRNA:   3'- guCGaAGUCUUCGCG-GUAUUGUGG---GG- -5'
2748 3' -51.8 NC_001491.2 + 119553 0.71 0.860427
Target:  5'- gGGCgUUCAccuuuaugcauaugaGAGGCGCUAUucGGCAUCCCg -3'
miRNA:   3'- gUCG-AAGU---------------CUUCGCGGUA--UUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 117600 0.7 0.894459
Target:  5'- uCGGCUcuggCGGGAGCGUCGaAGCgcaagcgggccaACCCCa -3'
miRNA:   3'- -GUCGAa---GUCUUCGCGGUaUUG------------UGGGG- -5'
2748 3' -51.8 NC_001491.2 + 117447 0.66 0.977174
Target:  5'- gCAGCaUCGGccccGGCGgCGgcuucguGCGCCCCg -3'
miRNA:   3'- -GUCGaAGUCu---UCGCgGUau-----UGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 116046 0.72 0.805465
Target:  5'- gAGCggCGGAGGCGCCGgggcuACgACCgCCa -3'
miRNA:   3'- gUCGaaGUCUUCGCGGUau---UG-UGG-GG- -5'
2748 3' -51.8 NC_001491.2 + 115897 0.73 0.767461
Target:  5'- cCGGCUccuccUCGGAcgaccGUGCCAUccacgGGCGCCCCa -3'
miRNA:   3'- -GUCGA-----AGUCUu----CGCGGUA-----UUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 115439 0.66 0.979564
Target:  5'- -cGCUUCGGGgagcuGGCgGCCA--GCGgCCCg -3'
miRNA:   3'- guCGAAGUCU-----UCG-CGGUauUGUgGGG- -5'
2748 3' -51.8 NC_001491.2 + 114302 0.66 0.985625
Target:  5'- cCGGCgUguGGAGCugGUgGUugAGCACCCCg -3'
miRNA:   3'- -GUCGaAguCUUCG--CGgUA--UUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 107442 0.66 0.985625
Target:  5'- gGGCUcgucuucaugcUguGggGCGCCc--ACGCCCa -3'
miRNA:   3'- gUCGA-----------AguCuuCGCGGuauUGUGGGg -5'
2748 3' -51.8 NC_001491.2 + 97464 0.67 0.974583
Target:  5'- aAGCUUCccacGgcGCGCUuaAGCGCCgCCg -3'
miRNA:   3'- gUCGAAGu---CuuCGCGGuaUUGUGG-GG- -5'
2748 3' -51.8 NC_001491.2 + 97233 0.68 0.954433
Target:  5'- aCAGCaugUAGAcgAGCGCCugaaGAUGCCCUg -3'
miRNA:   3'- -GUCGaa-GUCU--UCGCGGua--UUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 96705 0.66 0.987143
Target:  5'- -uGCUUUuGggGCGaCCcgagagcgcgguaGUGACGCCUCg -3'
miRNA:   3'- guCGAAGuCuuCGC-GG-------------UAUUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 94512 0.67 0.965536
Target:  5'- gCAGCUgucgCAGAAGaGCCucuGCuACCCUc -3'
miRNA:   3'- -GUCGAa---GUCUUCgCGGuauUG-UGGGG- -5'
2748 3' -51.8 NC_001491.2 + 88492 0.69 0.931001
Target:  5'- -cGCUUCAGu--CGCCuggugGACACCUCu -3'
miRNA:   3'- guCGAAGUCuucGCGGua---UUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 86167 0.67 0.968771
Target:  5'- gCAGC-UCGGggGCGCgCu--GCGCCa- -3'
miRNA:   3'- -GUCGaAGUCuuCGCG-GuauUGUGGgg -5'
2748 3' -51.8 NC_001491.2 + 84783 0.7 0.894459
Target:  5'- cCAGCaaaaaCAGu-GCGCCAUAACGaacauuCCCCa -3'
miRNA:   3'- -GUCGaa---GUCuuCGCGGUAUUGU------GGGG- -5'
2748 3' -51.8 NC_001491.2 + 83728 0.66 0.987303
Target:  5'- uGGCg-CAGGuuuuCGCCAUucacaAACGCCCCu -3'
miRNA:   3'- gUCGaaGUCUuc--GCGGUA-----UUGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 81654 0.67 0.962071
Target:  5'- uCGGCUaUgAGcuGUGUCAUAuuACGCCCCu -3'
miRNA:   3'- -GUCGA-AgUCuuCGCGGUAU--UGUGGGG- -5'
2748 3' -51.8 NC_001491.2 + 77321 0.68 0.94536
Target:  5'- -cGCgaCAGuucuaccGAGCGCCAU-ACACCCg -3'
miRNA:   3'- guCGaaGUC-------UUCGCGGUAuUGUGGGg -5'
2748 3' -51.8 NC_001491.2 + 73016 0.66 0.983781
Target:  5'- gGGCUgaauacuucCAGGAG-GCUAaauuGCACCCCg -3'
miRNA:   3'- gUCGAa--------GUCUUCgCGGUau--UGUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.